BAC Information

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BAC

Clone NameMSMg01-053M20
Chromosome7 (Build37)
Map Location 65,684,503 - 65,684,994
singlet/doubletsinglet
Overlap genenone
Upstream geneGabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053M20.T7 (MSMg01no053_m20.b1)MSMg01-053M20.TJ (MSMg01no053_m20.g1)
ACCAG281918
length696694
length of high quality
(start - end)		---540 (74 - 613)
definitionCHROMAT_FILE: MSMg01no053_m20.b1 PHD_FILE: MSMg01no053_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:49 2005CHROMAT_FILE: MSMg01no053_m20.g1 PHD_FILE: MSMg01no053_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTGCATTTCTTCATCTTTCTGCATG
GTCAGTACTAACATTTTCTCTTTCATTACTGGATTTATTAGTTTGAATAT
TTTTCTTAATTTTGAGTAATTTAAAAATTTAAGACAGAACAACCATCATA
TTTGGATGGTTTTAATAGTACTCTATGTTTGTTCCTATTTTCTCTCCTCT
ACTCCTTATTTAAATTCAGTTTGCTTTTGATTTTCCTCTCTATTTATTTA
ACTTTTATTTAAATGGAATTACATTGTCACAAAATTACACAACATGCTTT
GACCATATTCTCCATACTCTTGTTATCCCTCATTTACCTTCTCCATCTCA
TTAGTTTCTTAATGGAATAGTGTGAAAAAAATCTTCCTTCTTTCTTTCTC
TCTTCCTTTCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTA
TTTCTTTTAACATAGCATTCACAACTCTAAATTTTCCTTTCAGCAGTGGC
TTAACTTTTCCCAAATACCTTGGTCAACCTCTATTAGATGATTTCGATAC
TGGCTGCTATGTATGTCTTATTCTATATATTTTCCATATGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_m20.g1 MSMg01no053_m20.g1 CHROMAT_FILE:
MSMg01no053_m20.g1 PHD_FILE: MSMg01no053_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:49 2005
         (540 letters)



>mm_chr7_65684435_65685374
          Length = 940

 Score =  824 bits (426), Expect = 0.0
 Identities = 488/540 (90%), Gaps = 48/540 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgcatttcttcatctttctgcatggtcagtactaacattttctctttcattactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttgcatttcttcatctttctgcatggtcagtactaacattttctctttcattactgga 501

                                                                       
Query: 61  tttattagtttgaatatttttcttaattttgagtaatttaaaaatttaagacagaacaac 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttattagtttgaatatgtttcttaattttgagtaatttaaaaatttaagacagaacaac 441

                                                                       
Query: 121 catcatatttggatggttttaatagtactctatgtttgttcctattttctctcctctact 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcatatttggatgtttttaatagtactctatgtttgttcctattttctctcctctact 381

                                                                       
Query: 181 ccttatttaaattcagtttgcttttgattttcctctctatttatttaacttttatttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttatttaaattcagtttgcttttgattttcctctctatttatttaacttttatttaaa 321

                                                                       
Query: 241 tggaattacattgtcacaaaattacacaacatgctttgaccatattctccatactcttgt 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 tggaattacattgtcacaaaattacacaacatgctttgaccgtattctccatactcttgt 261

                                                                       
Query: 301 tatccctcatttaccttctccatctcattagtttcttaatggaatagtgtgaaaaaaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatccctcatttaccttctccatctcattagtttcttaatggaatagtgtgaaaaaaatc 201

                                                                       
Query: 361 ttccttctttctttctctcttcctttcttcctttctttctttctttctttctttctttct 420
           ||||                                                ||||||||
Sbjct: 200 ttcc------------------------------------------------ttctttct 189

                                                                       
Query: 421 ttctttctttctttctttctttctttctttctttctttctttctttctttctttttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttctttctttctttctttctttctttctttctttctttctttctttctttctttttattt 129

                                                                       
Query: 481 cttttaacatagcattcacaactctaaattttcctttcagcagtggcttaacttttccca 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 128 cttttaacatagcattcacaactctaaattttcctttcagcggtggcttaacttttccca 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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