BAC Information

Click to search

BAC

Clone NameMSMg01-053P12
Chromosome7 (Build37)
Map Location 16,798,323 - 16,798,585
singlet/doubletsinglet
Overlap geneDhx34
Upstream geneLOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2
Downstream geneGpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053P12.T7 (MSMg01no053_p12.b1)MSMg01-053P12.TJ (MSMg01no053_p12.g1)
ACCAG282031AG282032
length806710
length of high quality
(start - end)		---263 (75 - 337)
definitionCHROMAT_FILE: MSMg01no053_p12.b1 PHD_FILE: MSMg01no053_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:02 2005CHROMAT_FILE: MSMg01no053_p12.g1 PHD_FILE: MSMg01no053_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTAAAATTAGGGGGAGCGGAAAGGGGTCTTCAGAGAGGGGGGGGGNAG
GGGANTTTTTTCAAAAAAAGGGGGGTTGTATAGAAGAGGAGAGGGGAGAT
GAGTGCTCGGGGGGGTTTGTCCAAGTTTGAAGGGGAGATATTGATGAGAG
GGGGGTTATGTATGTTAGTGGGGAATGGGCGGTGATTTTGATAGGACATA
GGTTTTAGAAGGGGGAAGTGGAGGGAGATGTGACGTAATTTTGATCGTAT
ACTGGGTTTTTCCTCTGGCTGTCACTCGTTTTATTTGGTGTGACTCCGGT
CGAATTGGGCATTATGGGTTGGTTGCCTGAATTTTTTTTTTACGGCGAGA
GGATCGTGTAGGGGAGCGTGAGATGGTGGGGTTGGTGTGAGGGCGATGCG
GATTAGAGTTTATTTTTTAGAATGATTAAGAGATGCATTTGTGTACCCGA
ATTATTCAATAGCGAGGCAGGGGCATATTTGGGATAGTTGAATATTTGGG
ATCGGGGAGTATGGGTGACAGCGTAGGATAGAACCGATTAAGGCGTCGCA
GACCTAATCGAAACAATGAGGATATTAGAAATAAATTCTATGGAAAAAGA
GGAAACACTAAGTTATCGGATTCGGGTTGGTATTAGCTATTTCGGTATTT
GGGGCATTTATGTCGCGGGCACAATGGGTAGAATAGCGTCGTAGCGAAAA
GTTACGGCGGATTCCCGATTAACAAAAACCCGGCATATACTGGGGTAAAT
AAACGCGGCCTGGGCAAATATAAAAATGGGTGGGTCATCTAGGCGCGCAA
ACTCCG

CTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGCAGCCGCTGCAGTTTGGCCTGTG
GGTCGTAGCTCATCTCCTTCACCTTCCCTGGGTGGAGAGAGGGTAGGAGC
GGGTGCTGAGGAGGGCAATGAGCATGCGCAGCAGCACAAAGACCTGCTGG
ACATCCGTTCAGCCCCATACATGCCACTCTGCACCACAGCTCCTGAGAGA
ATATTCTAGGCCTGCCCCAACGTTCTGCTGACTTCCAGAGCATGGATCAA
GAGTGCCCAGTATATGCTGTCCCCAACCTTTCAGAGGTGGGAGCGGTGGG
AGAGCTTCGCATCACTGCGATGTGAAGGGGACAGTAGGGCTTCACCCTGC
TCCGGCCCCACCCCCTTTTGCTTCCTGGCCCAGAGCGATCTGCCTTGCTA
TCACACACTCAGACTTTGTACCACAGGCCCAATGTCCCCGGGTTGCTAGG
CCCCTCCATCGCAGAAGCCACGACACAGGCACATCTTTTGCATAACCGAT
GATTTGATGCCTGTTACGTATCACGCTCGGCTTGACATCCCCACCCCCTA
CCCATTCTTTTCCCTTTTCCCCGCACTTTGCTCCCTCTCATGTTTCTATC
CTCACCCCCCCTCCGATTACTTCTTTTCTTTCTACTCCCCCTCATACGCT
TTGCCTCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_p12.g1 MSMg01no053_p12.g1 CHROMAT_FILE:
MSMg01no053_p12.g1 PHD_FILE: MSMg01no053_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:02 2005
         (263 letters)



>mm_chr7_16798123_16798785
          Length = 663

 Score =  495 bits (256), Expect = e-144
 Identities = 262/264 (99%), Gaps = 2/264 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcagccgctgcagtttggcctgtgggtcgtagctcatctccttcaccttccctgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcagccgctgcagtttggcctgtgggtcgtagctcatctccttcaccttccctgggtg 260

                                                                       
Query: 61  gagagagggtaggagcgggtgctgaggagggcaatgagcatgcgcagcagcacaaagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagagggtaggagcgggtgctgaggagggcaatgagcatgcgcagcagcacaaagacc 320

                                                                       
Query: 121 tgctggacatccgttcagccccatacatgccactctgcaccacagctcctgagagaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctggacatccgttcagccccatacatgccactctgcaccacagctcctgagagaatat 380

                                                                       
Query: 181 tctaggcctgccccaacgttctgctgacttccagagcatggatcaagagtgcccagtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggcctgccccaacgttctgctgacttccagagcatggatcaagagtgcccagtata 440

                                   
Query: 241 tgctgtc-cccaacctttcagagg 263
           ||||| | ||||||||||||||||
Sbjct: 441 tgctg-cacccaacctttcagagg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |