BAC Information

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BAC

Clone NameMSMg01-054F10
Chromosome7 (Build37)
Map Location 28,664,024 - 28,664,387
singlet/doubletsinglet
Overlap gene4732475C15Rik
Upstream geneEG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59
Downstream genePrkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054F10.T7 (MSMg01no054_f10.b1)MSMg01-054F10.TJ (MSMg01no054_f10.g1)
ACCAG282302AG282303
length679701
length of high quality
(start - end)
582 (43 - 624)578 (70 - 647)
definitionCHROMAT_FILE: MSMg01no054_f10.b1 PHD_FILE: MSMg01no054_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:30 2005CHROMAT_FILE: MSMg01no054_f10.g1 PHD_FILE: MSMg01no054_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTCGAAGAGGATCCGCGGAATTCAAACATAACTCGGACACACT
CTATTTCATTCAATGAAAATTTCTTTTTCCTGCTTTGAATTGGACGTTTT
AGCCTGTGAACTTTCTCCTTTTCATTAAAAAAAAAAATCTATAAAAATGA
GGTGTGAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT
CTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA
CCATCCATCATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAATACAGCT
ACAGTGTACTTACATATAATAAATAAATAAATAAATCTTTAAAAAAATGA
GGTGTGAATGTGAAAGAAGTCAGCATAAATAACAATGATGACAACAGTTT
TTATAGTTGGGGATTTAACTCAGTTGTAGAACACTTTCCCAGCATGCTTA
AAGCCCTAGTTCCATCCTCAGCATTACTAAATAAATAAAAGTTAAAAAAT
AAGGATTTCGTGTTACTGTATTCCACGAATTTGAATATTGCATTTAATCT
TAGAATCAACACATTATCAACTCCATCCAAGTTATTGTTATTATTTCTTT
TCCTCTTCCTCCTTTTTCTTATTGTTACTACTATTATTACTATTGGTTTT
TCAGAGGGCAGGTCTCATGTAACCCCTGG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGACTCGAGAAATTCTTTGATGTACTTTAAGGTCTCCACCAC
AATTCTTCACATTCAGAAGGCTTCTTGCCAGTGTGAGTTCTAAAATGAGC
AAGAAACTGGTAGTGGTATTGAAAGGCTTCCCCACATTTGTTACATTGAA
ATGGTTTCTCACCAGTGTGGATTCTCTGATGAATCCTAAGGGCTGTACCA
TGAACAAAGCCCTTTCCACATTCCTTGCACTGATAGGGTTTCACATCAGT
ATGGATTCTCTGATGTTTATTGAGTTGGGACTTAAGTCGGAAACTGGACC
CACACTGCTCACATTCAAATGATTTTTCTCCAGTATGAATGCTCTGGTGC
CGAGTAAGCTGACCCAGAACAGTGAAGCCCTTCCCACAGTCCTTACACTC
AAAGGGTCTCTCTTCAGAATGAATTTTCTGATGTTGCTTGAGGTTTGAGC
GATGATTAAAAGCTTTCCCACACTCACTACATTCATATGGTTTCAAACTG
GCATGGATAACCCTATGTTCAATAAGGCTGGAGACATGCTTGAAGGACTT
CCCACATTCTTCACAAGCAAATGGTTTTTGATTTGTATGGACAGTTTTAT
GGTAAGTAAGCTGACTGGGAAGATGAAAAGCCTTTCCACATTCTTTGCAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_f10.g1 MSMg01no054_f10.g1 CHROMAT_FILE:
MSMg01no054_f10.g1 PHD_FILE: MSMg01no054_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:30 2005
         (578 letters)



>mm_chr7_28663410_28664387
          Length = 978

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 215 tagggtttcacatcagtatggattctctgatgtttattgagttgggacttaagtcggaaa 274
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 978 tagggtttcacatcagtatggattctctgatgttgattgagttgggacttaagtcggaaa 919

                                                                       
Query: 275 ctggacccacactgctcacattcaaatgatttttctccagtatgaatgctctggtgccga 334
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 918 ctggacccacactgctcacattcaaatgatttttctccagtgtgaatgctctggtgccga 859

                                                                       
Query: 335 gtaagctgacccagaacagtgaagcccttcccacagtccttacactcaaagggtctctct 394
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 858 gtaagctgagccagaacagtgaagcccttcccacagtccttacactcaaagggtctctca 799

                                                                       
Query: 395 tcagaatgaattttctgatgttgcttgaggtttgagcgatgattaaaagctttcccacac 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcagaatgaattttctgatgttgcttgaggtttgagcgatgattaaaagctttcccacac 739

                                                                       
Query: 455 tcactacattcatatggtttcaaactggcatggataaccctatgttcaataaggctggag 514
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 738 tcaccacattcatatggtttcaaaccggcatggataaccctatgttcaataaggctggag 679

                                                                       
Query: 515 acatgcttgaaggacttcccacattcttcacaagcaaatggtttttgatttgtatggaca 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acatgcttgaaggacttcccacattcttcacaagcaaatggtttttgatttgtatggaca 619

               
Query: 575 gttt 578
           ||||
Sbjct: 618 gttt 615



 Score = 70.3 bits (36), Expect = 4e-16
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 197 ccacattccttgcactgatagggtttcacatcagtatggattctctgatgtt 248
           ||||||||||||||||||||||||||||| |  ||||||||| |||||||||
Sbjct: 408 ccacattccttgcactgatagggtttcacgttggtatggattttctgatgtt 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)