BAC Information

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BAC

Clone NameMSMg01-054P19
Chromosome7 (Build37)
Map Location 141,777,978 - 141,778,533
singlet/doubletsinglet
Overlap genenone
Upstream gene4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699
Downstream geneLOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3, Ptpre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054P19.T7 (MSMg01no054_p19.b1)MSMg01-054P19.TJ (MSMg01no054_p19.g1)
ACCAG282776AG282777
length694703
length of high quality
(start - end)
527 (36 - 562)557 (74 - 630)
definitionCHROMAT_FILE: MSMg01no054_p19.b1 PHD_FILE: MSMg01no054_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:17 2005CHROMAT_FILE: MSMg01no054_p19.g1 PHD_FILE: MSMg01no054_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCT
GCTCCGCATTTTGTCATGGTGATGATAAAACGAACATACTTGAGGTTTGG
GAGGTGGCTTATGGCATAAAGTGCCTGCCACATGAGTATAAGGACCTGAT
TTTGTGTCCTCAGGACTCAAATTAAAAGCTGTATGCAGCAGCCTTGTCCA
TTTGTAATACCAGGGCCCAGGTGATGGGTATAGGAGTGGCTTGGGGCTTG
TTATTAAGCCAGTCTGGCTGAATCAAGAAGTTTCATGTTTGGTGAGAGAC
CACACCTGTTTCATGGTGGAGGGCAGGAGGTTTCTGAGAGCACAAGACAG
GAAACTTCAGGTTGGTGGAAATGTCTCAGATCACAATTTAGTGCTGGTTT
CATCACTGTCTGCATCTGCCCAAACAAAATGAACTATGCTCTATTTAAAA
TCCATGAATATTGAGGTATGCAAATTTTATTTTTAATAAGGATGAGCTTT
TTAAAAAAAATCATATCCTGAATAAGCTCCGATTTAGCTCAGGGATGAAT
TCAACCAGCATGTCTAGATAAGAAATAAACCCAGTCAGTAGGTTGCCCTT
GGGTATCTTACCACCCACCGGAAAAACCTACAATGGAGGATTAAGATGTG
TGCTTAGAGTTCATGTACCTTAAGCACAAGTGAGTGGAAGGCCA
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGTATGAGGCTGACTGGGAAAATTG
GTTTCCTGGGATAACGGGCCTTCCACAGAGCTCCATAATGATTAGTTATC
ACCCCCTTCAGGCCGTGGGTTGTTTTCCTGCAAGGAGTAGTAGCTCAGGC
TCAGGGACCACAGGGTCTGCAAGCACTTTTGTGTCTGCGGCATCCATGGT
ACCTTACTTCCAGGTACATAGTTCAGAAAGATAAAGACTCTATGTAGCTC
TTCTTCCCAGGGCTCGTGGTCCCTGGAACCTTCAATTTGCCTCAGAGTCA
TGAATAGCCACACCTCTTCTTCGTAGGACTGAAAGCCATTTTACTTTGGA
AGCTGAGTGGGAGCTTGTGTTTTAGAACGCTGACTCTGCTGCATTAATTT
TCCCTTCTGTAGGTCTAAGGGGATGGGCTTTTGTGGGTACCTGGCCCTCT
CCTAAATGCTTTCTTTCAATGAGCTGCCTTTGCATGCCTGAGCTCTGGTC
TTATTTGTTTGAAGAGATGACACCGAAACCCATGGGTGACTACATGGGAT
TTTAAAAGTAACACACCATCCCAGTTGTTGGGGACAGGGCTCAGTGTTAG
CCTAGCAGTACCCATCAGCACCAGGCTCTGGCTTACTCCGGTCTCTAGGT
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_p19.g1 MSMg01no054_p19.g1 CHROMAT_FILE:
MSMg01no054_p19.g1 PHD_FILE: MSMg01no054_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
         (557 letters)



>mm_chr7_141777778_141778733
          Length = 956

 Score = 1031 bits (533), Expect = 0.0
 Identities = 551/557 (98%), Gaps = 1/557 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtatgaggctgactgggaaaattggtttcctgggataacgggccttccacagagctc 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 756 caggtatgaggctgactgggaaaattggtttcctgggataacggggtttccacagagctc 697

                                                                       
Query: 61  cataatgattagttatcacccccttcaggccgtgggttgttttcctgcaaggagtagtag 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cataatgattagttatcactcccttcaggccgtgggttgttttcctgcaaggagtagtag 637

                                                                       
Query: 121 ctcaggctcagggaccacagggtctgcaagcacttttgtgtctgcggcatccatggtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctcaggctcagggaccacagggtctgcaagcacttttgtgtctgcggcatccatggtacc 577

                                                                       
Query: 181 ttacttccaggtacatagttcagaaagataaagactctatgtagctcttcttcccagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttacttccaggtacatagttcagaaagataaagactctatgtagctcttcttcccagggc 517

                                                                       
Query: 241 tcgtggtccctggaaccttcaatttgcctcagagtcatgaatagccacacctcttcttcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcgtggtccctggaaccttcaatttgcctcagagtcatgaatagccacacctcttcttcg 457

                                                                       
Query: 301 taggactgaaagccattttactttggaagctgagtgggagcttgtgttttagaacgctga 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 456 taggactgaaagccattttactttggaagctgagt-ggagcttgtgttttagaaccctga 398

                                                                       
Query: 361 ctctgctgcattaattttcccttctgtaggtctaaggggatgggcttttgtgggtacctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctctgctgcattaattttcccttctgtaggtctaaggggatgggcttttgtgggtacctg 338

                                                                       
Query: 421 gccctctcctaaatgctttctttcaatgagctgcctttgcatgcctgagctctggtctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gccctctcctaaatgctttctttcaatgagctgcctttgcatgcctgagctctggtctta 278

                                                                       
Query: 481 tttgtttgaagagatgacaccgaaacccatgggtgactacatgggattttaaaagtaaca 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttgtttgaagagatgacaccaaaacccatgggtgactacatgggattttaaaagtaaca 218

                            
Query: 541 caccatcccagttgttg 557
           |||||||||||||||||
Sbjct: 217 caccatcccagttgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space:   517462
Effective search space used:   517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)