Query= MSMg01no055_a05.b1 MSMg01no055_a05.b1 CHROMAT_FILE:
MSMg01no055_a05.b1 PHD_FILE: MSMg01no055_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:19 2005
(500 letters)
>mm_chr7_106448497_106449396
Length = 900
Score = 795 bits (411), Expect = 0.0
Identities = 473/499 (94%), Gaps = 11/499 (2%)
Strand = Plus / Plus
Query: 5 gaattcactgccccgccgccctcagagctgacaatgatccccaaggccgtgaacgtagaa 64
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtcccggggccctcagagctgacaatgatccccaaggccgtgaacgtagaa 264
Query: 65 atgaatgtagaacacattaaaagctcttagaatttggagatttattgagtacattaacgg 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaatgtagaagacattaaaagctcttagaatttggagatttattgagtacattaacgg 324
Query: 125 atttaaactcagagctatgtccttcgtgctcacaaaggtaatctcaccactggtagaaat 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttaaagtcagagctatgtccttcgtgctcacaaaggtaatctcaccactggtagaaat 384
Query: 185 ttgtccgtttggggctggggagatggctcggtgctgaagagcatgtgctgctctgcaaag 244
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 ttgttcgtttggggctggggagatggcttggtgctgaagagcatgtgctgctctgcaaag 444
Query: 245 gactgagttggattccagtacccacagtgtgtggttcccaatctcctgaaacttcagctc 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 445 gactgagttggattccagtacccacagtgtgtggctcccaatctcctgaaacttcagttc 504
Query: 305 gcaggggatcaactgccttcttccggtctcaggtacctgcacacatgtgcacaagttcct 364
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 -cagggaatcaactgccttcttccggtctcaggtacctgcacacatgtgcacaagttcct 563
Query: 365 ccacagacgtacacactaacacgcgcacataattaaaaataaaataaaaatcttctttta 424
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccacagatgtacacacaaacacgcgcacataattaaaaataaaataaaaatcttctttta 623
Query: 425 aaacataataaattcactcacatagatgtctggtggtgcccaaaaca---gtcaatgaaa 481
|||||||||||||||||||||||||||| |||||||||| | | ||||||||
Sbjct: 624 aaacataataaattcactcacatagatgcctggtggtgc-------atgggccaatgaaa 676
Query: 482 aaagagataccttaccagg 500
|||||||||||||| ||||
Sbjct: 677 aaagagataccttagcagg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_a05.g1 MSMg01no055_a05.g1 CHROMAT_FILE:
MSMg01no055_a05.g1 PHD_FILE: MSMg01no055_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:19 2005
(434 letters)
>mm_chr7_106589637_106590470
Length = 834
Score = 770 bits (398), Expect = 0.0
Identities = 422/434 (97%), Gaps = 7/434 (1%)
Strand = Plus / Minus
Query: 1 ccctgtgaaaggtccctgggttcggctgcaggaagactgccctgcataacacttcagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ccctgtgaaaggtccctgggttcggctgcaggaagactgccctgcataacacttcagctt 487
Query: 61 gttgggagattcagaggcagatctgagccctgcccccaaggagctgccagtgctgagtgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gttgggagattcagaggcagatctgagccctgcccccaaggagctgccagtgctgagtgt 427
Query: 121 gctcaacccgagtctctcagtgtggagggcactgtgggtaggcagcccaagcagtttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctcaacccgagtctctcagtgtggagggcactgtgggtaggcagcccaagcagtttctg 367
Query: 181 gaagatgtctgtagtagatgctgaaagccagaatggctcctctgcctggatggcagggag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaagacgtctgtagtagatgctgaaagccagaatggctcctctgcctggatggcagggag 307
Query: 241 gggcttccagagggacagccgaaggagactaggaaaatgagacctcctcctgccaagcaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gggctttcagagggacagccgaaggagactaggaaaatgagacctcctcctgccaagcaa 247
Query: 301 caccgaaggagtccaggtggacaatagccctatacccctgtagaccctcagaggccaagc 360
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 246 caccgaaggagtccgggtggacaatagccctatacccctgtagacc-------gccaagc 194
Query: 361 ctgcccctcctgggagcagagccaccaagggaccctcccccaacccctccataccaggag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctgctcctcctgggagcagagccaccaagggaccctcccccaacccctccataccaggag 134
Query: 421 gcctgcgatgtatg 434
||||||||||||||
Sbjct: 133 gcctgcgatgtatg 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
