BAC Information

Click to search

BAC

Clone NameMSMg01-055B13
Chromosome7 (Build37)
Map Location 94,366,695 - 94,524,826
singlet/doubletdoublet
Overlap geneLOC621477, Nox4
Upstream geneVmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
Downstream geneTyr, Grm5, Ctsc, LOC100039756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B13.T7 (MSMg01no055_b13.b1)MSMg01-055B13.TJ (MSMg01no055_b13.g1)
ACCAG282858AG282859
length705736
length of high quality
(start - end)
409 (69 - 477)552 (76 - 627)
definitionCHROMAT_FILE: MSMg01no055_b13.b1 PHD_FILE: MSMg01no055_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:26 2005CHROMAT_FILE: MSMg01no055_b13.g1 PHD_FILE: MSMg01no055_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,524,418 - 94,524,826)(94,366,695 - 94,367,246)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAAT
TCTGAATTTGCCTCTTCAGACATACGTTAACTTCGTGAGGAACATTACTT
ACCCTCTGTTATATTTCCCTATTTCATCAAATAAAAGTTTCCACCGAGGA
CGCCCAATGAAAAGTCTCGAATTCAGTGTGTGATATTTTTCTCCAATTAT
CTTCTGTCAAAAAGGAAGGATATGCTTTATAAAATGCAGCTCTGCATAAA
CAGTACATTTCTCGTACATGAATTCACCTGAGCTAGGATCTCCTTCCAAA
TTGCTGTGTCCTAAGCAGCAAATCAGAATTCTAAGGAGTACAATTGCAAA
GGGTCTTTTTCATTTTCTTTCCCTTTAAAATTCAGTATTCTTTTGAAAGT
TATTTTCACAAATTGCTGACTTACTTTGATTTTAGTTATTTTCTTCATTT
TTAAATAAATTCAATGTAAGATGAAGAACACACTCCAGTTCATCACATAC
TATTAAGTGCACTCAAAATTAAGTGTCATTGAAATACGTTTGTAGCTAAG
TACATTCGCCATATTACGCTCACTATATGATTAAATTCACACCCATTTCC
ATCACAAATTTGGGGGTAATAATTCTAGACATGACTTCCCACGACACTGT
ATCTCTTAAGTTTACTCCCTATATTAAAGTGATTGTTAAAGGTTTCATCC
TTGCA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGCTGGAAGACAGGGAAAGTG
AAGAAGAAAAAGAGAAAATGTGAAAGTTTTAAATGTGAAAAATCAAGGCT
GTGAATTGTGTGATTCCAGGTAGAGAAGGGAAATTCACAAAAGGCTGTAG
TCATTCAGAGTTCATGATTAACATACAAGATTTTATATCTGTAGTCATTT
TGAGTTCATTACTAGCATACAAGTTATGTCTGCCACCAAAAGAGCTTTAT
TTTACTCAGCACAAATTTCCATCCATTGCTCATCTCCCCATACTAATGGA
TAAAGATGCCTAGACAATGAGATCATAGCCCATACTTCTGCAGTCCTCTC
ATCACCCAAGGTCAGTGGGTAAGGGACACCTAGATACATAGACCAAACCT
TCCAGCTCAAACTTCTGCAGTCATCTCATAGCTTCTGATGCTGACAGATA
AGGGGAGTAAGGGTCCTGAGCCTACAGGCCACACTTTCACAATTACCCTA
GCTCTTGACACTGACAGATCCACAGACCATCAGCCTCTTAATCTAAATTC
CACTCAACAACATCAGTTATATAAGACCAGGCCCAGAAAGAAGTAAACAC
AACACAAAAAAAAAATCCAAGAAAATATGGTTCCTATAAAAATTAGCCAT
ATGACAACGGACTCTATTTAGAATGTCTTATAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b13.b1 MSMg01no055_b13.b1 CHROMAT_FILE:
MSMg01no055_b13.b1 PHD_FILE: MSMg01no055_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:26 2005
         (409 letters)



>mm_chr7_94524218_94525026
          Length = 809

 Score =  737 bits (381), Expect = 0.0
 Identities = 402/409 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacatacgttaacttcgtgaggaacattacttaccctctgttatatttccctatttcatc 60
           |||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||
Sbjct: 609 gacatacgttaacttcatgaggaacattacttaccctctgttacattttgctatttcatc 550

                                                                       
Query: 61  aaataaaagtttccaccgaggacgcccaatgaaaagtctcgaattcagtgtgtgatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaataaaagtttccaccgaggacgcccaatgaaaagtctcgaattcagtgtgtgatattt 490

                                                                       
Query: 121 ttctccaattatcttctgtcaaaaaggaaggatatgctttataaaatgcagctctgcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttctccaattatcttctgtcaaaaaggaaggatatgctttataaaatgcagctctgcata 430

                                                                       
Query: 181 aacagtacatttctcgtacatgaattcacctgagctaggatctccttccaaattgctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aacagtacatttctcgtacatgaattcacctgagctaggatctccttccaaattgctgtg 370

                                                                       
Query: 241 tcctaagcagcaaatcagaattctaaggagtacaattgcaaagggtctttttcattttct 300
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 369 tcctaagcagcaaatcagaattctaaggagtacaattgcaaagggtcactttcattttct 310

                                                                       
Query: 301 ttccctttaaaattcagtattcttttgaaagttattttcacaaattgctgacttactttg 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttcctttaaaattcagtattcttttgaaagttattttcacaaattgctgacttactttg 250

                                                            
Query: 361 attttagttattttcttcatttttaaataaattcaatgtaagatgaaga 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attttagttattttcttcatttttaaataaattcaatgtaagatgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no055_b13.g1 MSMg01no055_b13.g1 CHROMAT_FILE:
MSMg01no055_b13.g1 PHD_FILE: MSMg01no055_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:26 2005
         (552 letters)



>mm_chr7_94366495_94367446
          Length = 952

 Score = 1044 bits (540), Expect = 0.0
 Identities = 549/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaagctggaagacagggaaagtgaagaagaaaaagagaaaatgtgaaagttttaaatg 60
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgtaagctggaagacaaggaaagtgaagaagaaaatgagaaaatgtgaaagttttaaatg 260

                                                                       
Query: 61  tgaaaaatcaaggctgtgaattgtgtgattccaggtagagaagggaaattcacaaaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaaatcaaggctgtgaattgtgtgattccaggtagagaagggaaattcacaaaaggc 320

                                                                       
Query: 121 tgtagtcattcagagttcatgattaacatacaagattttatatctgtagtcattttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagtcattcagagttcatgattaacatacaagattttatatctgtagtcattttgagt 380

                                                                       
Query: 181 tcattactagcatacaagttatgtctgccaccaaaagagctttattttactcagcacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattactagcatacaagttatgtctgccaccaaaagagctttattttactcagcacaaa 440

                                                                       
Query: 241 tttccatccattgctcatctccccatactaatggataaagatgcctagacaatgagatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccatccattgctcatctccccatactaatggataaagatgcctagacaatgagatca 500

                                                                       
Query: 301 tagcccatacttctgcagtcctctcatcacccaaggtcagtgggtaagggacacctagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcccatacttctgcagtcctctcatcacccaaggtcagtgggtaagggacacctagat 560

                                                                       
Query: 361 acatagaccaaaccttccagctcaaacttctgcagtcatctcatagcttctgatgctgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatagaccaaaccttccagctcaaacttctgcagtcatctcatagcttctgatgctgac 620

                                                                       
Query: 421 agataaggggagtaagggtcctgagcctacaggccacactttcacaattaccctagctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 agataaggggagtaagggtcctgagcctacaggccacactttcacaattgccctagctct 680

                                                                       
Query: 481 tgacactgacagatccacagaccatcagcctcttaatctaaattccactcaacaacatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacactgacagatccacagaccatcagcctcttaatctaaattccactcaacaacatca 740

                       
Query: 541 gttatataagac 552
           ||||||||||||
Sbjct: 741 gttatataagac 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)