BAC Information

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BAC

Clone NameMSMg01-055C08
Chromosome7 (Build37)
Map Location 69,023,560 - 69,023,873
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055C08.T7 (MSMg01no055_c08.b1)MSMg01-055C08.TJ (MSMg01no055_c08.g1)
ACCAG282892AG282893
length711727
length of high quality
(start - end)
316 (41 - 356)309 (75 - 383)
definitionCHROMAT_FILE: MSMg01no055_c08.b1 PHD_FILE: MSMg01no055_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:29 2005CHROMAT_FILE: MSMg01no055_c08.g1 PHD_FILE: MSMg01no055_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCACTTCTGAGCCCCATTTTTAAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGACCTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGTTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATAGCATCTAAATATATTAAATATGTTTATTTATTTTTGACCAGAA
TTATTATTTTCAGATATCCATGTGAATATTTTGAATTGGTTTGTTTTATT
TTTCTTGTCCATGGACCATTCTAGAATACTAGTACATTATTTATACATAG
AATAGAGGATACCACTGTTAAATATTTTTTTCAAAGTTTGTTCCACATTA
TCAATATCAACAATTTACTAGGTCAATTTCTTAATTTTCAAAGGATTACA
CTGGAGTAAAAATTCTATAATATGTTTTGAAAAATTAAATTTGTCGAACA
CTTACAATGAATAAACTAATATGATAATTTTCAACAGACGTAAGGTCTGT
GAGGAGGAATTTACAATGTTTATGTGCACACCTATTACTCCCTATTCTAA
TCCCTTTCTCG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCCCAATCACCACAATCATTATTG
AAACCAAAGTACATGTGTTCATTCTCTTTAATAACACATGAAATCTTTTA
AGGCAGATGATGTACTTGGATATGGGACCATCTAGTGGAAAATGAGAGCA
TTTCACAGCAAGCATCACTGAAAATTTTTGACTCTTTAGCCATACTAAGA
TTTTGGCTGGCTAGATATAATTTATAAATGTATATGCAATAGCAAATTTG
GGAAATTCATGGGGGCTACTGTGCTTAAATACTCATCAAATATGCTGCAG
ATGTAGATTACAAAAAAATGGTTAAATGGTGTACAACTTTCAAAATGCAT
TTTGCCTCAGAGCCTAGCATAGCAGGCCAGTAAAACTCAGATAATTTTCT
ATTACTGCCATCCTTCTTATCTTTGGATTGCATGTTAATACCCATATGGC
TAATGTCTAATATTGTTAGTCTATGAACTATACATCACCAGGTGCATACT
TATCCTATCAAGCATGTTCTCGACTGATTTATCTACTTGTCTCGTCATAT
TATAATCTCTCTCTCTCTTTCTCTCCCTCTCTCTCATATATATTCAAAAA
CACTCTCCTGTTTACCCTGCATGTAAAATCTTCTTACTCTTTCTCCTCTT
TCTAGGACATTGTCCCTCTGCATTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_c08.g1 MSMg01no055_c08.g1 CHROMAT_FILE:
MSMg01no055_c08.g1 PHD_FILE: MSMg01no055_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:29 2005
         (309 letters)



>mm_chr7_69023360_69024073
          Length = 714

 Score =  542 bits (280), Expect = e-158
 Identities = 304/314 (96%), Gaps = 5/314 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccccaatcaccacaatcattattgaaaccaaagtaca--tgtgttcattctctttaat 58
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 201 ttccccaatcaccacaatcattattgaaaccaaagtacatgtgtgttcattctctttaat 260

                                                                       
Query: 59  aacacatgaaatcttttaaggcagatgatgtacttggatatgggaccatctagtggaaaa 118
           || ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 261 aatacatgaaatcttttaaggcagctgatgtacttggatatggaaccatctagtggaaaa 320

                                                                       
Query: 119 tgagagcatttcacagcaagcatcactgaaaatttttgactctttagccatactaagatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagcatttcacagcaagcatcactgaaaatttttgactctttagccatactaagatt 380

                                                                       
Query: 179 ttggctggctagatataatttataaatgtatatgcaatagcaaatttgggaaattcatgg 238
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttggctggctagatataatttataaatgtatatgcaatagcaaacttgggaaattcatgg 440

                                                                       
Query: 239 gggctactgtgcttaaatactcatcaaatatgctgcagatgtagattacaaaaaaa---t 295
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 441 gggatactgtgcttaaatactcatcaaatatgctgcagatgtagattacaaaaaaaaaat 500

                         
Query: 296 ggttaaatggtgta 309
           ||||||||||||||
Sbjct: 501 ggttaaatggtgta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 714
Length adjustment: 9
Effective length of query: 300
Effective length of database: 705
Effective search space:   211500
Effective search space used:   211500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)