BAC Information

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BAC

Clone NameMSMg01-055F06
Chromosome7 (Build37)
Map Location 133,400,778 - 133,401,115
singlet/doubletsinglet
Overlap genenone
Upstream gene4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6
Downstream geneSbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055F06.T7 (MSMg01no055_f06.b1)MSMg01-055F06.TJ (MSMg01no055_f06.g1)
ACCAG283028AG283029
length702727
length of high quality
(start - end)
291 (70 - 360)89 (60 - 148)
definitionCHROMAT_FILE: MSMg01no055_f06.b1 PHD_FILE: MSMg01no055_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:42 2005CHROMAT_FILE: MSMg01no055_f06.g1 PHD_FILE: MSMg01no055_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGATGTTCGCACATATATCAGGCTTCCCACAGATTCCTGCAACT
CAACCTCCCAGGGCTCAAACTCCATGGGCACTTGTGAATACACCCCCCCC
TCTCTCACACACACACACAGGCACACTAAGAAATAACCCAGCTAGCTCTC
TCCCAAGGATTTAGCCTTTTCTCAGTCACTGTGTACAGAAGAGCAACCTT
CCCATGAGCAACCCCAGGTGAGAATAGAGGGCTCTGGTTTTAACACTCTC
TTCTGCTGAGCCACCACCTCTCTTCCAGGTCTGTCCTCCCAGGCTCTAGG
GCATCTCTCTATTAGCCCCCCCTGCCCCCTCTGTTAACCTATACTTACAA
GAATAAAGCAGGGCGTGATGAAGAAACAGGAGACGCTGACGAGACGGGGC
GAGAAGATGGTAGGCTCTAGGACAGCCTGAGCTGCACGCTGAGATGTCCT
GCGTTTCAGTTTGGGTTTCTATTGCTGTGATAAAACACCCTAACCCACCA
AGCCGGTTGCGGAAGGAAAGGGGTTATTTGGCTTACCGCTCCATAGCTCT
GTTCCTCATGGAAGGCAATCTAGGACAGGAAACTCTAAACAGGACCCGCA
AATCTTGTAAACTAGAACTGAACCACGAAGCTCAATTCCGCACGTCGCCT
TA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTCCTATGGCAAGTTCAGAGTTAGAGACAAGAGAATCACT
TACAAGCTCAGGGGCCAGCTAGTTTGCCATGTGCAGCACAGCACAGAAAC
AACATAGCATGCGCTGATTAACGTGGGAAGTGAAAAGCTGACCTCTGACC
TGCACACATGCATCATGGTACATACCCGCTAGTGAACAAGGCCACACATG
CACCATGATGATTAGAGCGCTATATGCTGCCGAGCATAACGTAGTGCATT
ACCTGTTCTGAAAGCTTCTACTTTTAAATTTAAGTCTTACTACATAACTT
CCCTTCTCTTCACATCTGCTCCATTTTCCCTTCACTCATTCAAATACCGA
ATAATGTGTATCTGCTGAGCCTCTGCCCATACTTACCGATAGCCTTCCTC
GCCCCAAGCTCACCCCTTACTGGATGTCTCGTACCCTACCTCTAGAATTC
TCCCACCTTCGTGTCCTTCTGATCCCTGGTTTTATTCCCTGACTCTCATT
CCCCTTTTTTGCTACCCCTATCGTTAATTACCCCTCTATGTTTTCCCCCT
CCCCCCTAATCCTTATTCGTTTTCCCCATTTCCACGTTCTCTCCTATCCC
ATTCCCCCTTCTCTATGCCCCCCCCCGTTTCGCCTACGCTCGTTCCCCTT
TCCATTGCCCTTTTCTTACTACCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_f06.b1 MSMg01no055_f06.b1 CHROMAT_FILE:
MSMg01no055_f06.b1 PHD_FILE: MSMg01no055_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:42 2005
         (291 letters)



>mm_chr7_133400492_133401181
          Length = 690

 Score =  383 bits (198), Expect = e-111
 Identities = 280/340 (82%), Gaps = 54/340 (15%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatcaggct-tcccacagattcctgcaactcaacctcccagggctcaaactccatggg 59
           ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 tatatcaggctgt-ccacagattcctgcaactcaacctcccagggctcaatctccatggg 566

                                                                       
Query: 60  cacttgtgaatacac---------------------------------------cccccc 80
            ||||||||||||||                                       | | | 
Sbjct: 565 tacttgtgaatacacacacacacatactctctctctctctctctctctctctctctctct 506

                                                                       
Query: 81  ctctct------------cacacacacacacaggcacactaagaaataacccagctagct 128
           ||||||            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctctcacacacacacacacacacacacacaggcacactaagaaataacccagctagct 446

                                                                       
Query: 129 ctctcccaaggatttagccttttctcagtcactgtgtacagaagagcaaccttcccatga 188
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ctct-ccaaggatttagccttttctcagtcactgtgtacagaagagcacccttcccatga 387

                                                                       
Query: 189 gcaaccccaggtgagaatagagggctctggttttaacactctcttctgctgagccaccac 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcaaccccaggtgagaatagagggctctggttttaacactctcttctgctgagccaccac 327

                                                   
Query: 249 ctctcttccaggtctgtcctcccaggctctagggcatctc 288
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctcttccaggtctgtcctcccaggctctagggcatctc 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)