BAC Information

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BAC

Clone NameMSMg01-055M07
Chromosome7 (Build37)
Map Location 108,200,350 - 108,344,808
singlet/doubletdoublet
Overlap geneEG435996, Fchsd2, EG622673
Upstream genePold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539
Downstream geneAtg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055M07.T7 (MSMg01no055_m07.b1)MSMg01-055M07.TJ (MSMg01no055_m07.g1)
ACCAG283347AG283348
length711710
length of high quality
(start - end)
255 (65 - 319)233 (57 - 289)
definitionCHROMAT_FILE: MSMg01no055_m07.b1 PHD_FILE: MSMg01no055_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:16 2005CHROMAT_FILE: MSMg01no055_m07.g1 PHD_FILE: MSMg01no055_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,344,556 - 108,344,808)(108,200,350 - 108,200,582)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACACATGTCCTGGCAGCTATGCCTTAGTATTAAGTACAGTTTCAGA
CCACTTGGGATTAGGAACAAAGCAGTCAGTCTCTGAAGAGTAGCAAAAGT
GGACTCTTAGTTCTAACTAGAGAGAAGACAACCAGAGACAAACATGCATT
CTCCCTAACTCTTCTTTACTGTTTTAAAAAAGATGGGTATGGTCTTCCTG
CAAGTGATTTAAGCTTTTGGCTAGACCACTTGCCTGGTAGTAACCTCTAT
GTTCAATTAACAGCATCTAAACAGACAAACATGCCAAACTTAAGATATTC
CAGACTTCTTTTGAACGACGACCCAACAGATTTTTCCAGAAGTCCAAGTT
ATTTCCCTTCTCCCTGTCCCTATTTAATGTTATCAAAGGGCACGTTTTGG
GCTTTCTTAATTTAACCCACAATTTTCCTATTTAAACCCTTAGAAATCCC
ATCAACACCCACAATCTCCAAAGGAGTTTTTTAAGTCATTATATGTGGAA
AGCGGCCCCCCCTAAATATGTAGCGGGCTTTAATAGTCTTTGGTTTTTCT
CTTGAGCGTATTTCCCCCTCGCCCAGTTATCCACCCCATTTTTCTTTTTT
TTTCCCCTTTCAAGACACCACCCCTATTTTACTATCCTTCAGACAAGTAA
GCTACCACCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTACATCTATCTTCTTCATATACCACATGAGAAGTCTGGGGCT
ACGAGAAGACCATCACCAGACAGGGTCACTCAAAGAAGAGACACTGAACA
GTCCTTCTGAGAGTGTTTCCGAGAGAGCCTTCACTAAGCTGCCAAAGGTG
GAAAGATGACTTTGGCGCCACCATGTGGCATAAAGGAAGAAACGCAGAGC
TGGGGAAGCTGTTAGCCTTCCAGGATGGGGGCAATTCGTCCACACTAGGA
CCTTCCTGGGTAATAGGGTCCTGCTCTTTCCCGTTACACAGCCTCTGTCC
CTACTGCTCACTCCAATGCAGTGTCTCTCTCCCACACCAGACTAGGAGCT
CCTCAAGGCCATAATCCAGGCCTGAATCATCACTCCATTTGTTATGCCAT
TGTAACGGTTTGAGCGAAGTGATCCAAGCTGACCTGAACCCCGTATACCA
TGTTTGCAACCATTTCTGCCCCTTATTGTTTATTTGAATCATTTGTTTTA
GAAGCAAGAGTTTTGCTATTTACTGCCCGATTCCCTCTATGTCTGCAGCT
GCTCCCTATGCTGATCATTTCCCTTGTGTTTGACATGTTTTGAATCCTTT
TGACTTTTCATAAAGCCTTTTTCTCCTCTGTTTCCATCTTACCGTATCTT
TTCCCTGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_m07.b1 MSMg01no055_m07.b1 CHROMAT_FILE:
MSMg01no055_m07.b1 PHD_FILE: MSMg01no055_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:16 2005
         (255 letters)



>mm_chr7_108344356_108345010
          Length = 655

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcagctatgccttagtattaagtacagtttcagaccacttgggattaggaacaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tggcagctatgccttagtattaagtacagtttcagaccacttgggattaggaacaaagca 394

                                                                       
Query: 61  gtcagtctctgaagagtagcaaaagtggactcttagttctaactagagagaagacaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtcagtctctgaagagtagcaaaagtggactcttagttctaactagagagaagacaacca 334

                                                                       
Query: 121 gagacaaacatgcattctccctaactcttctttactgttttaaaaaagatgggtatggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gagacaaacatgcattctccctaactcttctttactgttttaaaaaagatgggtatggtc 274

                                                                       
Query: 181 ttcctgcaagtgatttaagcttttggctagaccacttgcctggtagtaacctctatgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 273 ttcctgcaagtgatttaagcttttggctagaccacttgcctggtagtaacctctatgctc 214

                        
Query: 241 aattaacagcatc 253
           |||||||||||||
Sbjct: 213 aattaacagcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no055_m07.g1 MSMg01no055_m07.g1 CHROMAT_FILE:
MSMg01no055_m07.g1 PHD_FILE: MSMg01no055_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:16 2005
         (233 letters)



>mm_chr7_108200150_108200782
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacatctatcttcttcatataccacatgagaagtctggggctacgagaagaccatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacatctatcttcttcatataccacatgagaagtctggggctacgagaagaccatcac 260

                                                                       
Query: 61  cagacagggtcactcaaagaagagacactgaacagtccttctgagagtgtttccgagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagacagggtcactcaaagaagagacactgaacagtccttctgagagtgtttccgagaga 320

                                                                       
Query: 121 gccttcactaagctgccaaaggtggaaagatgactttggcgccaccatgtggcataaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gccttcactaagctgccaaaggtggaaagatgactttggcgccaccatgtggcgtaaagg 380

                                                                
Query: 181 aagaaacgcagagctggggaagctgttagccttccaggatgggggcaattcgt 233
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aagaaacgcagagctggggaagctgttagtcttccaggatgggggcaattcgt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)