BAC Information

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BAC

Clone NameMSMg01-056E07
Chromosome7 (Build37)
Map Location 30,485,282 - 30,635,606
singlet/doubletdoublet
Overlap gene1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344
Upstream geneFbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik
Downstream geneZfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E07.T7 (MSMg01no056_e07.b1)MSMg01-056E07.TJ (MSMg01no056_e07.g1)
ACCAG283718AG283719
length709703
length of high quality
(start - end)
243 (77 - 319)410 (73 - 482)
definitionCHROMAT_FILE: MSMg01no056_e07.b1 PHD_FILE: MSMg01no056_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:53 2005CHROMAT_FILE: MSMg01no056_e07.g1 PHD_FILE: MSMg01no056_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(30,635,361 - 30,635,606)(30,485,282 - 30,485,691)
sequence
TTCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGCCGCGG
AATTCACTTTTTTGCGCAACTTGGAGATGCCTTTGGTAGAAGTTATGGGA
CATTGAATGCATAGGGATTACCATGTTGCATTTATCTGTCTGTAACATGA
AGAATAACCAAGAACACAGATAGAACGATATCTGTATTGTAAAGAAGGCT
TATCAGAAAAGGCTTTGCTCAACTCTGTAAGTCACATCTCTGTCATGAGT
CTTTTGACAATTAAAGCTGGTTCAGAGACAGTGAAGTGTGGCTATTGTTA
TTATTATTAGGCTATTATTGTACACGCGGAACATGTGCTGATTGGAAGGT
ACTCAGTATGAAGTATTAAGGAGTGGATTTCTTAAGGAATTATTATAATT
AATTTAATTTAATTTAATTTTGCCAATTGGAAGTATTTATTCCAGACCTA
AGTGTAGCAACAGGTGTCTAGAGCACAGGGGTTTTGAAGGCAGAGACCAT
GTCCCAGCGTCTCACTCAGCAGCTGCGGGGTGGTCGTGGGGTATGGTTAG
TCCTTATTCTTCTTATTCTTTTTCCACCCCCTTTTTCTCCCTTCCCTTCT
TTTCTCCCCTCTGCCCTCCCTTCCCCTCACCATTTATCCCCACTTTTTTT
CCTTACCTTCTCAGCTTCCGCTTTCTTTTATATTCCTCCCTGCTTTCTTC
TCCCCTTTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCTAGCCTGGAGGGTGGAGCTCTCA
GGACTTGCACTCACTCGACTCCAGGGCTCTCATGGGACATTATGTAGAAC
TTTTTGTCTTCGGCGGCCCTTTCGACCTTTGTTTTCCAGATGAGGCTATT
CGTTCTATGCAGGCCCATATAAAGTCAAAGTGGGTTGAGAGCAGAAATAG
TTCTCAGCACCTAAGGGTGGGGACCTAGTGGGTGGGGCAGGATTGTGGAA
CCCTAGGCATTACTGTTTGAGGCACCTTGAGTGTAGTTTGCAGAAAGAGT
CCCCTGCATAACTGGAAGCGGGAGGGGTGACCCTACAGACCAGACCCACC
AACTGTGGACTGGGGTCCCCAAGGGATTACGTGTCCAGCGGGCTGTTGTA
ACGGAAGATTTCTTCCTCCGTGTAGTCTCTGATGGTGTTCAGTGTGTGAC
CACCACCCATCACCTTCAGCACGTTACTTAAGAATGCAGAGGCAATTATG
GATCATGTAGAGTCTTGAACATCTCCCTCTCCCACTGTCTAGTATCCCAG
ACCAGCAATCAGCGCTCTCCTCACTTTGCCAAGAAACTGCCAGAGTCGCC
AGTCATCAAGTCCTTGCAATATGAAATAATGTCTCGTGAATACTTGCGGG
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e07.b1 MSMg01no056_e07.b1 CHROMAT_FILE:
MSMg01no056_e07.b1 PHD_FILE: MSMg01no056_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:53 2005
         (243 letters)



>mm_chr7_30635174_30635816
          Length = 643

 Score =  406 bits (210), Expect = e-118
 Identities = 236/246 (95%), Gaps = 3/246 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcctttggtagaagttatgggacattgaatgcatagggattaccatgttgcatttatc 60
           ||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||
Sbjct: 433 atgcctttggtagaaattatgggacattgaatgcatagggattaagatgttacatttatc 374

                                                                       
Query: 61  tgtctgtaacatgaagaataaccaagaacacagatagaacgatatctgtattgtaaagaa 120
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 373 tgtctgtaacatgaagaataagcaagaacacagaaagaacgatatctgtattgtaaagaa 314

                                                                       
Query: 121 ggcttatcagaaaaggctttgctcaactctgtaagtcacatctctgtcatgagtcttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 313 ggcttatcagaaaaggctttgctcaactctgtaagtcacatctctgtcatgagccttttg 254

                                                                       
Query: 181 acaattaaagctggttcagagacagtgaagtgtggctattg---ttattattattaggct 237
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 253 acaattaaagctggttcagagacagtgaagtgtggctattgttattattattattaggct 194

                 
Query: 238 attatt 243
           ||||||
Sbjct: 193 attatt 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no056_e07.g1 MSMg01no056_e07.g1 CHROMAT_FILE:
MSMg01no056_e07.g1 PHD_FILE: MSMg01no056_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:53 2005
         (410 letters)



>mm_chr7_30485082_30485891
          Length = 810

 Score =  762 bits (394), Expect = 0.0
 Identities = 406/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctagcctggagggtggagctctcaggacttgcactcactcgactccagggctctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctagcctggagggtggagctctcaggacttgcactcactcgactccagggctctca 260

                                                                       
Query: 61  tgggacattatgtagaactttttgtcttcggcggccctttcgacctttgttttccagatg 120
           |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 261 tgggacattatgtagaactttttgtcctcggtggtcctttcgacctttgttttccagatg 320

                                                                       
Query: 121 aggctattcgttctatgcaggcccatataaagtcaaagtgggttgagagcagaaatagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctattcgttctatgcaggcccatataaagtcaaagtgggttgagagcagaaatagtt 380

                                                                       
Query: 181 ctcagcacctaagggtggggacctagtgggtggggcaggattgtggaaccctaggcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagcacctaagggtggggacctagtgggtggggcaggattgtggaaccctaggcatta 440

                                                                       
Query: 241 ctgtttgaggcaccttgagtgtagtttgcagaaagagtcccctgcataactggaagcggg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ctgtttgaggcaccttgagtgtagtttgcagaaagagtcccctgcataactggaagtggg 500

                                                                       
Query: 301 aggggtgaccctacagaccagacccaccaactgtggactggggtccccaagggattacgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggggtgaccctacagaccagacccaccaactgtggactggggtccccaagggattacgt 560

                                                             
Query: 361 gtccagcgggctgttgtaacggaagatttcttcctccgtgtagtctctga 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccagcgggctgttgtaacggaagatttcttcctccgtgtagtctctga 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)