BAC Information

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BAC

Clone NameMSMg01-056N22
Chromosome7 (Build37)
Map Location 70,071,839 - 70,072,349
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056N22.T7 (MSMg01no056_n22.b1)MSMg01-056N22.TJ (MSMg01no056_n22.g1)
ACCAG284170AG284171
length713701
length of high quality
(start - end)
300 (73 - 372)516 (78 - 593)
definitionCHROMAT_FILE: MSMg01no056_n22.b1 PHD_FILE: MSMg01no056_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:38 2005CHROMAT_FILE: MSMg01no056_n22.g1 PHD_FILE: MSMg01no056_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCTCTACCTGTATCCACAGTCAGGAAGCCTAAGTGCTTGACTTACTG
GAGCCCCTCTCTCAGGAAATGATTTTCCTGCTAGACACTAAGCTTTGCTT
AATTTATCCTGCCTGACCATTGCTCTAGTATTGGGAGTCCTACCTAGTGC
TTGGCCTGGAGTTCTGAGAAAACCTAGCCACTGCAATAGGAAACAAATTC
AAGACTTTCACCTACAGACCCTAGGCAGGGAAGCTACCATGTTCCAGGAG
GATAGTCCTCAGTCCTTGGGTCATTTGAGGCATGAAGAGTTGGGGTAAGG
GGACACAGATATGCTTTTAAATTATAGTGGTATGTAAATAGACTAATAGA
TCCTTTAAAGTTCGTGGTCAAAGATCTGAATGAACCATTTACATAAAATT
GTAGTCATGAAGGAAGCCTAGTGTATTACTCTGGAAATATGTGTCTAGAC
TCTTACCTCTAGGTATTTGGCTTGAGCTTTCCAGATGAGAAAGGTTGTTT
CTAATTTTGAGGGAACAACGTTTAGTACGTTGTCCCCATTACATCTTCCC
ACAGTTCACCAAACAATAGTCTAAGACCCACTGTGACCTTTAGATACTTT
TTGAATTATCACATGGTTTTCTCATGTGTACATTGATTACAATTCTCTTG
TGTTACAACTTGA
NCTCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGAAGAGAAATGTCCCTG
CTGGAGGACTGTGCCCTTTCATCTGGTAAGTGTGCACAGCCTTGTTTCCA
GCAGACACTTACCTAGAACTGACAACAAAGTGGTCTTTGGAGATGTTAGT
TCTCATTGCTTTCAGAGATGATTAAAAGGCCCACTGCCACTGCCCAAGAA
TCCAAGTTTGCAGGTGGTGTTTGTGAAACTGTAATACTGTGTTTCATTTT
TTTATGTTTATTTTATACATACTTATTTATTTATTCATATACTTGACTAT
ATATATATGTGTGTGCATTAGTTACATATTTATAAATGCATTTTATCAGT
ATTCCTTACAAAATACATAATTACATTTATTTTGTATTTCTCATCATATT
AGGCCACATTTCTATGAGTAAATTGCTAAATTTTACAGATAGATATTAAT
AACTTTATACATTCATCTACATCTGTAATATTTATTTACATATATTTTGC
ATGGATATGTAAATATTTATCAGGCTGGCTATTTGGAGTCTACTTGTCCT
TGCAAGATGCATCTTAACATTGATGCTCTAAAACATCTTTAAATCTTCCA
CTGTTCCTGACCCCTTTCCTCTTCCTGTCTGGACTATGGCCTAAAAGTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_n22.g1 MSMg01no056_n22.g1 CHROMAT_FILE:
MSMg01no056_n22.g1 PHD_FILE: MSMg01no056_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:38 2005
         (516 letters)



>mm_chr7_70071639_70072555
          Length = 917

 Score =  903 bits (467), Expect = 0.0
 Identities = 502/517 (97%), Gaps = 7/517 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgagaagagaa-atgtccctgctggaggactgtgccctttcatctggtaagtgtgca 59
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgagaggagaacatgtccctgctggaggactgtgccctttcatctggtaagtgtgca 260

                                                                       
Query: 60  cagccttgtttccagcagacacttacctagaactgacaacaaagtggtctttggagatgt 119
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cagccttgtttccagcagagacttacctagaactgacaacaaagtggtctttagagatgt 320

                                                                       
Query: 120 tagttctcattgctttcagagatgattaaaaggcccactgccactgcccaagaatccaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttctcattgctttcagagatgattaaaaggcccactgccactgcccaagaatccaag 380

                                                                       
Query: 180 tttgcaggtggtgtttgtgaaactgtaatactgtgtttcatttttttatgtttattttat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcaggtggtgtttgtgaaactgtaatactgtgtttcatttttttatgtttattttat 440

                                                                       
Query: 240 acatacttatttatttattcatatacttgactatatatatatgtgtgtgcattagttaca 299
           |||||| |||||||||||||||||||||||||||||||||      ||||||||||||||
Sbjct: 441 acatacatatttatttattcatatacttgactatatatat------gtgcattagttaca 494

                                                                       
Query: 300 tatttataaatgcattttatcagtattccttacaaaatacataattacatttattttgta 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 tatttataaatgcattttatcagtattccttacaaaatacatagttacatttattttgta 554

                                                                       
Query: 360 tttctcatcatattaggccacatttctatgagtaaattgctaaattttacagatagatat 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 555 tttctcatcatattaggccacatttctatgagtaaattgttaaattttacagatagatat 614

                                                                       
Query: 420 taataactttatacattcatctacatctgtaatatttatttacatatattttgcatggat 479
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 taataactttatacaatcatctacatctgtaatatttatttacacatattttgcatggat 674

                                                
Query: 480 atgtaaatatttatcaggctggctatttggagtctac 516
           |||||||||||||||||||||||||||||||||||||
Sbjct: 675 atgtaaatatttatcaggctggctatttggagtctac 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space:   458942
Effective search space used:   458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)