BAC Information

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BAC

Clone NameMSMg01-057B09
Chromosome7 (Build37)
Map Location 16,939,512 - 17,062,473
singlet/doubletdoublet
Overlap geneSae1, BC057627, Tmem160, Npas1
Upstream geneObox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3
Downstream geneLOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057B09.T7 (MSMg01no057_b09.b1)MSMg01-057B09.TJ (MSMg01no057_b09.g1)
ACCAG284332AG284333
length698698
length of high quality
(start - end)		628 (44 - 671)430 (72 - 501)
definitionCHROMAT_FILE: MSMg01no057_b09.b1 PHD_FILE: MSMg01no057_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:55 2005CHROMAT_FILE: MSMg01no057_b09.g1 PHD_FILE: MSMg01no057_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,939,512 - 16,940,134)(17,062,044 - 17,062,473)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCTTTGTTTACCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTTCAATGCC
TTTTTCTTAAGTTCACAGAAATGGGTCTTTTTAATTTCTTGCTTGGTTAC
AATAATCATTACTTTTTTTCTTTAATTAGTGAACAAAAGAGATTTATTTA
TGTATGAGTGTTTTGCCTGCACATAGTCTACTACAATACGTGTATGCCTA
GCACCCATGAAGATCAGAAGAGGGCTGGATAGCCTGGATCTGGAGTTATG
GATAGTTATGACCCACTATGTGGGTGCTGAGAACTGAACCCCAACCCTCT
GTAAGAGGAACCAGTGCTCCTAACCACTGAGCTGCCACACCTCCAGCCCC
AACCAAAAACTCTCACCTACTGACCTCATTCTACTTCTCAGGGCAGCAGA
TGGCTTCCATGTGTGTCCTAGCTTTCTGCTAAGCATGCTTGCCATTGACT
GTGCTTGGAATCTTGAGTAACTCAAGAAGTTAATGTGCTGCTGAGTGGTG
GTGGCAGTCAACTTTAATTCCAACACTCATAATCTCCAAGTTCGAAGC

AATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACTTGGGAAGAGAGATTGTGAAAGGCC
CCGATTTACATCTCTAGAAGGGGCACTGATGTCCGAGTGTCCTCTCCTAC
TGAACTATGGTGCAGATTGCCCCAAGAGTTCCAAGGGGTGGCTGGGGCGC
CGGGGGGAGGGTTCTATAACTGAAGATGGCGATCGTGGTGGGACTCCAGG
GTGGAGAGGCTGGCAGAGCTTCCTGATGTGGTCAAACGGTGAGGATACTC
AGACACACCAGGCCTACACTATCCCAGATAGTTCCCGGAATGGGAACTAT
CCAGCAGGCAGGGGCCGCTGTAGGCGGGGCGAAGACAGGCACCGCCCCTC
GCCGCCGCCGCCCGTGGTCTCAAAGTCTGCGAGGCCGCCGTGGGCGCCGA
GAGCCGGGCTCCCCAGCCCGCGCGCCCCGGGGTCTATGGAGCGGCCCCTC
CACGCCACCCAGTGGACCCCACGCCGCGCCCCGAGCACGCCCAGTGGCCA
GGTAACCATGTCGTGAGTCCTGCGGGTGCGGGACGCCTGAATGTTTGGCG
GGAGGAAATGGGGACTTCTGGGTCCTGCTGGGATGCGAGGCTGATAGTCT
TGGTTACCTGGGAGGCCACGGCATTCGGACACCTATACCGCCGGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_b09.b1 MSMg01no057_b09.b1 CHROMAT_FILE:
MSMg01no057_b09.b1 PHD_FILE: MSMg01no057_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:55 2005
         (628 letters)



>mm_chr7_16939307_16940334
          Length = 1028

 Score = 1189 bits (615), Expect = 0.0
 Identities = 621/623 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttgtttacctctgagccccatttttaatggggttatttgattttctggagtcc 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttgtttagctctgagccccatttttaatggggttatttgattttctggagtcc 265

                                                                       
Query: 66  accttcttgagttctttatatatattggatattagtcccctatctgatttaggataggta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accttcttgagttctttatatatattggatattagtcccctatctgatttaggataggta 325

                                                                       
Query: 126 aagatcctttcccaatctgttggttcaatgcctttttcttaagttcacagaaatgggtct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagatcctttcccaatctgttggttcaatgcctttttcttaagttcacagaaatgggtct 385

                                                                       
Query: 186 ttttaatttcttgcttggttacaataatcattactttttttctttaattagtgaacaaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttttaatttcttgcttggttacaataatcattactttttttctttaattagtgaacaaaa 445

                                                                       
Query: 246 gagatttatttatgtatgagtgttttgcctgcacatagtctactacaatacgtgtatgcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagatttatttatgtatgagtgttttgcctgcacatagtctactacaatacgtgtatgcc 505

                                                                       
Query: 306 tagcacccatgaagatcagaagagggctggatagcctggatctggagttatggatagtta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tagcacccatgaagatcagaagagggctggatagcctggatctggagttatggatagtta 565

                                                                       
Query: 366 tgacccactatgtgggtgctgagaactgaaccccaaccctctgtaagaggaaccagtgct 425
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgagccactatgtgggtgctgagaactgaaccccaaccctctgtaagaggaaccagtgct 625

                                                                       
Query: 426 cctaaccactgagctgccacacctccagccccaaccaaaaactctcacctactgacctca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cctaaccactgagctgccacacctccagccccaaccaaaaactctcacctactgacctca 685

                                                                       
Query: 486 ttctacttctcagggcagcagatggcttccatgtgtgtcctagctttctgctaagcatgc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttctacttctcagggcagcagatggcttccatgtgtgtcctagctttctgctaagcatgc 745

                                                                       
Query: 546 ttgccattgactgtgcttggaatcttgagtaactcaagaagttaatgtgctgctgagtgg 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgccattgactgtgcttggaatcttgagtaactcaagaagttaatgtgctgctgagtgg 805

                                  
Query: 606 tggtggcagtcaactttaattcc 628
           |||||||||||||||||||||||
Sbjct: 806 tggtggcagtcaactttaattcc 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no057_b09.g1 MSMg01no057_b09.g1 CHROMAT_FILE:
MSMg01no057_b09.g1 PHD_FILE: MSMg01no057_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:55 2005
         (430 letters)



>mm_chr7_17061844_17062673
          Length = 830

 Score =  801 bits (414), Expect = 0.0
 Identities = 426/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttgggaagagagattgtgaaaggccccgatttacatctctagaaggggcactgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tcacttgggaagagagattgtgaaaggccccgatttacatctctagaaggggcactgatg 571

                                                                       
Query: 61  tccgagtgtcctctcctactgaactatggtgcagattgccccaagagttccaaggggtgg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tccgagtgtcctttcctactgaactatggtgcagattgccccaagagttccaaggggtgg 511

                                                                       
Query: 121 ctggggcgccggggggagggttctataactgaagatggcgatcgtggtgggactccaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctggggcgccggggggagggttctataactgaagatggcgatcgtggtgggactccaggg 451

                                                                       
Query: 181 tggagaggctggcagagcttcctgatgtggtcaaacggtgaggatactcagacacaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggagaggctggcagagcttcctgatgtggtcaaacggtgaggatactcagacacaccag 391

                                                                       
Query: 241 gcctacactatcccagatagttcccggaatgggaactatccagcaggcaggggccgctgt 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gccaacactatcccagatagttcccggaatgggaactatccagcaggcaggggccgctgt 331

                                                                       
Query: 301 aggcggggcgaagacaggcaccgcccctcgccgccgccgcccgtggtctcaaagtctgcg 360
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 330 aggcggggcgaagacaggcaccgcccctcgccgccgctgtccgtggtctcaaagtctgcg 271

                                                                       
Query: 361 aggccgccgtgggcgccgagagccgggctccccagcccgcgcgccccggggtctatggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aggccgccgtgggcgccgagagccgggctccccagcccgcgcgccccggggtctatggag 211

                     
Query: 421 cggcccctcc 430
           ||||||||||
Sbjct: 210 cggcccctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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