BAC Information

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BAC

Clone NameMSMg01-057K17
Chromosome7 (Build37)
Map Location 143,785,089 - 143,785,342
singlet/doubletsinglet
Overlap genenone
Upstream genePtpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057K17.T7 (MSMg01no057_k17.b1)MSMg01-057K17.TJ (MSMg01no057_k17.g1)
ACCAG284769AG284770
length718730
length of high quality
(start - end)
411 (69 - 479)254 (66 - 319)
definitionCHROMAT_FILE: MSMg01no057_k17.b1 PHD_FILE: MSMg01no057_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:41 2005CHROMAT_FILE: MSMg01no057_k17.g1 PHD_FILE: MSMg01no057_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCGCGCGGAATT
CATTGTTTTTTTCCGCTGAGTAGTACTCTGTTGTGTAAATGTACCACATT
TTCTGTATCCATTCCTCTGTTGGGGGACATCTAGGTTTTTTCCAGCTTCT
TGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCT
TACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGTGGTATTGCTGGA
TCTTCCAGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAAACTGATTT
CCAGAGTGATTGTACCAGCTTGTATTCCCACCAGCAATGGAGGAGTGTTC
TTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAGTGACACCAT
TTAAGAATGGACTGCCCCCACATGTCAGTTAAACCCCCTTTTAAAGATTT
AGTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGCGTGTCCTCC
TCCACTTTTTTCCCCCTTCTCCCTTCTTTCTTCTTTTTCTCCTTCTCATT
TCCCCTTATCTCTTCTCTCCTTCCTTCTTCTACTTCACACTCTTTTTTTC
TTTCTTTTCTATTATCTCCCTTTCTCTTTTTTTCTCCTTTTTTATCCTCC
TTCACCCCCTCTTTTTTCTTCCCTTCCTCTCCTTTCTAGATCTGTTATTT
TTCTTCCTCCTTGTTTTG
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCAGAAATTCTTTAAGGTCTCTGATTGGGAATGGTGAGGAAC
AGGGAGGGGTAAGGGCAGGAGGGACTCCTGGCTTAAATAATTTAAATAAG
ACCAGATCTGACAATATCATGTGACAAAATGTTGTGGTGCTAGCTCAGTC
ACATTTTTGGGGGAAATGTTTTTGAAAATTACCAAGGAGCTCTGTAAAAA
GTTAACACTTTTTAATTACCAGGTTAGTGTCACTTGGTGAAACTTTAATA
TAATAAGGCAGTTGACCAGACTCTCCTAATGGATGTAAAATGAAATAATT
GATTGAAATCAGACTATACGCCATGCATTGCTTCTTTTTCCCCCTTTTCC
TTCCTTCCTTCCTTCCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTCCCTCCCTCCCTCCCTTCCTTCCTTACTTTCTTCCTTTC
TTCGTTACTCCCTTCATCCTTCCATCATACTCTCTCCTTCACTCTTCCCT
ACTCCTATCTACCTTTTTCCCACTTTATTCTCATCCTTTTTTCTCTTCTA
CTTCTTAATCTCCCGTTTTTTTTTATTTTTTTTCCCCCTTCCCCCCTTTC
CCCCCTTTACCCCCTTTTTCCTTCCTTCCCTTTCACCATTTCTTCCCATA
ATTCCACCTTCCTTTCATCTCCACTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_k17.g1 MSMg01no057_k17.g1 CHROMAT_FILE:
MSMg01no057_k17.g1 PHD_FILE: MSMg01no057_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:42 2005
         (254 letters)



>mm_chr7_143784889_143785542
          Length = 654

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttaaggtctctgattgggaatggtgaggaacagggaggggtaagggcaggagggac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttctttaaggtctctgattgggaatggtgaggaacagggaggggtaagggcaggagagac 260

                                                                       
Query: 61  tcctggcttaaataatttaaataagaccagatctgacaatatcatgtgacaaaatgttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctggcttaaataatttaaataagaccagatctgacaatatcatgtgacaaaatgttgt 320

                                                                       
Query: 121 ggtgctagctcagtcacatttttgggggaaatgtttttgaaaattaccaaggagctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgctagctcagtcacatttttgggggaaatgtttttgaaaattaccaaggagctctgt 380

                                                                       
Query: 181 aaaaagttaacactttttaattaccaggttagtgtcacttggtgaaactttaatataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaagttaacactttttaattaccaggttagtgtcacttggtgaaactttaatataata 440

                         
Query: 241 aggcagttgaccag 254
           ||||||||||||||
Sbjct: 441 aggcagttgaccag 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)