Query= MSMg01no057_n22.b1 MSMg01no057_n22.b1 CHROMAT_FILE:
MSMg01no057_n22.b1 PHD_FILE: MSMg01no057_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:58 2005
(649 letters)
>mm_chr7_121279946_121280989
Length = 1044
Score = 1180 bits (610), Expect = 0.0
Identities = 634/646 (98%), Gaps = 11/646 (1%)
Strand = Plus / Plus
Query: 9 attcaacaacctta-ttcggatcccataaacagagggaaatactgtgatggcgatggcgt 67
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 attcaacaaccgtactt-ggatcccataaacagagggaaatactgtgatggcgatggcgt 267
Query: 68 ggagccgggcccaccagtccgtcattttatctcataacaggtgcaaaactccaagctgtc 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggagccgggcccaccagtccgtcattttatctcataacaggtgcaaaactccaagctgt- 326
Query: 128 tgtagggcttcagcccagtgcagtccccacttcttggcctgttcccattgtcatagacct 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ---agggcttcagcccagtgcagtccccacttcttggcctgttcccattgtcatagacct 383
Query: 188 ctgtcaggaactggctctgccctttacaatgacttgccttgtacgagcttccaaagctag 247
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtcaggaactg-ctctgccctttacaatgacttgccttgtacgagcttccaaagctag 442
Query: 248 gggttctgtgcacccctagcagtcctgaaatggggttcattaatacctaaccactgctcg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gggttctgtgcacccctagcagtcctgaaatggggttcattaatacctaaccactgctcg 502
Query: 308 atctctgcctctgtcttcagtaggacctctcatactctgtggtctctttcatccttttgc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atctctgcctctgtcttcagtaggacctctcatactctgtggtctctttcatccttttgc 562
Query: 368 aaccattctgttttacacacacacacacacacacacacacacacacacacacac----ta 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 aaccattctgttttacacacacacacacacacacacacacacacacacacacacacacta 622
Query: 424 taatgtatgatctatacatagctaagattggaataaaagagccagtaactgctaacaggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taatgtatgatctatacatagctaagattggaataaaagagccagtaactgctaacaggc 682
Query: 484 agctctccagagaaatccagattacttggtaacaatgtggcttataaatgtaccgttacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agctctccagagaaatccagattacttggtaacaatgtggcttataaatgtaccgttacc 742
Query: 544 caatacattctggcattgtgaggagacccagatgtgtgcatatatttttctgcaggctca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caatacattctggcattgtgaggagacccagatgtgtgcatatatttttctgcaggctca 802
Query: 604 caatacttgtgcttctaaacaactattaatgatgcagccaaagcgg 649
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 caatacttgtgcttctaaacaactattaatgatgcagccaaagcgg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1044
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1034
Effective search space: 660726
Effective search space used: 660726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_n22.g1 MSMg01no057_n22.g1 CHROMAT_FILE:
MSMg01no057_n22.g1 PHD_FILE: MSMg01no057_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:58 2005
(619 letters)
>mm_chr7_121359364_121360378
Length = 1015
Score = 1019 bits (527), Expect = 0.0
Identities = 552/561 (98%), Gaps = 4/561 (0%)
Strand = Plus / Minus
Query: 1 atgtctgttttatttctgtggtataatttcttctgtcataattatgttttgtgcataaga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgtctgtcttatttctgtggtataatttcttctgtcataattatgttttgtgcataaga 498
Query: 61 catacatacatacatatgcatggtattttctgaacttttaattcatttaaaatggcttat 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 catacatacatacatatgcatggtattttctgaac-tttaattcatttaaaatggcttat 439
Query: 121 tctacaatactgcctaaaacattgattcctgtgtgatatttgtgaaacagattttgtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctacaatactgcctaaaacattgattcctgtgtgatatttgtgaaacagattttgtaga 379
Query: 181 gttttttgaagatatggcataaatcaagcactaaccaacataactaaaatcaacccagta 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttttttgaagatatggcataagtcaagcactaaccaacataactaaaatcaacccagta 319
Query: 241 taagtttttagagtctgttttatatatcctttgctttgttgtttgacaatgtgatgtcat 300
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 318 taagtttttagagtctgttttatatatcctttgctttgttg-ttg--aatgtgatgtcat 262
Query: 301 ctaatggaggctggtataagctatttgggcattgtttcagtaattacttctttgttgagt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatggaggctggtataagctatttgggcattgtttcagtaattacttctttgttgagt 202
Query: 361 gtggggatataactcagtcttgggaatgctcttctagcatggtagaccatgagttaatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggggatataactcagtcttgggaatgctcttctagcatggtagaccatgagttaatcc 142
Query: 421 tcaacatcacaaaaactagatcaaaatatgaacatcttcatttttctttacagggaatgg 480
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 141 tcaacatcacaaaaaatagatcaaaatatgaacatcttcattcttctttacagggaatgg 82
Query: 481 ccttgagccttggagataaaatcaacctgtctcaaaagaagactagtctataaggatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ccttgagccttggagataaaatcaacctgtctcaaaagaagactagtctataaggatgaa 22
Query: 541 caaaaggtctttgaaagttta 561
|||||||||||||||||||||
Sbjct: 21 caaaaggtctttgaaagttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1015
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1005
Effective search space: 612045
Effective search space used: 612045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
