BAC Information

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BAC

Clone NameMSMg01-058E17
Chromosome7 (Build37)
Map Location 74,504,431 - 74,504,897
singlet/doubletsinglet
Overlap geneMef2a
Upstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17, Lysmd4
Downstream geneEG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058E17.T7 (MSMg01no058_e17.b1)MSMg01-058E17.TJ (MSMg01no058_e17.g1)
ACCAG285243AG285244
length709719
length of high quality
(start - end)
470 (38 - 507)190 (130 - 319)
definitionCHROMAT_FILE: MSMg01no058_e17.b1 PHD_FILE: MSMg01no058_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:30 2005CHROMAT_FILE: MSMg01no058_e17.g1 PHD_FILE: MSMg01no058_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCAATACGACTCCTATTGCAAGAGGAGGCGCGGAATTCTTCC
TTATGCGTTCTAATCCACCCAGACTCTCTCCAGGACTTAGAGATTTGGAG
TGGCTTTTGTGTTTCTGATGTTCTTTCAGAGTGGCCCTCAGGCTCCATTG
TTAGCCTCTTCTCTACAGAGCCTTGTGTTAGCAGTGTGTAGCAGCTCCAG
GAACCAAGTGCAAGGTTTTGGTTATACAGCCTTCATTCACAGAAGTTCTG
CAGTAGCATCATTCTTTGTCTTCAGGTTATAGTGTGTGGTTTTCCTTTCC
AGTACAAACATTTAAGTGAAATATTTTAGAGTTACACTGCCACCATTGTA
CTCTGAAGTCTTTTCTTCAAGTAGGGGATCCATTGACTTAATCTGTCAGT
TGCTTTAGAGCTTTTAGTTAGGGATGAGCTAGCTAGAGGCTCTAGAATGT
TTTGGAGTATAAATAAACAAATGAACACTAAATATTCTTGCCTCTTTCTC
ATAGCATGTGCATACTAGTTCTGGATTACTGTTAGAATCATCATGTTTTT
TGCCTTTTGCTTTTTTTTTTTTCCCTGAAAAGCCATGTTGTTAATTTACC
GGCTTACTTCCTTTAATTTAAATTGAGAATTACCTTGCTTTTACCATAAT
GTGAGTTATAGGGCTTACTCTATTCAGTCAAGGGCTTTCATGGTACCTTT
TTTTCTGAT
CCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTGAAGACAGTCAAATCCA
CCAGTGTTATAGTTCTCAGTAACTGCTCCTATCTTTAACACAAAGGTTAA
AAATTAAAACCATCAAAAAAATAATTCTAGGGCTGGAGAGATGGCTCAGC
AGTTAAGAGCACTGGCTGTTCTTCCAGAGGACCTGAGTTCAATTCCCAGC
ATCCACATGGTGGCTCACAACCATATGTAATGAGATCTGATGCCCTTTTC
TGGTACACAGGTATGCATGTCTATTTAGCTCTTAAAATTAGTTAAATAAG
TAAATCTTTAAAAAAAAATTCTAGCTACAGGAAATTATTAAGGAATATAT
AACATAAAGGAATGAGGATATAGCTTTACAGTAGAACATGCCCAGGATAT
TTGAGGTCATGGTTTCAAGTCCCAGAACTGCCAAAAACTTGTCAAACATT
CCTTTGTTTTTGTTTCGTTTTTCGAGACAGGCTTTCTCTGTGTAGCCCTG
GCTATCCAGGAACTCACTTTGTAGACCTGGTTGGCCTCCAACTCATAAAT
CTGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGCGTGTGTCACCAC
ACCCGGCTACTTTTCGAACATTCTTATGAAATATTTATAAATGTAAATTA
TCACCTCAAATGTTCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_e17.b1 MSMg01no058_e17.b1 CHROMAT_FILE:
MSMg01no058_e17.b1 PHD_FILE: MSMg01no058_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:30 2005
         (470 letters)



>mm_chr7_74504228_74505097
          Length = 870

 Score =  872 bits (451), Expect = 0.0
 Identities = 463/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttccttatgcgttctaatccacccagactctctccaggacttagagatttggag 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattcttccttatgtgttctaatccacccagactctctccaggacttagagatttggag 611

                                                                       
Query: 64  tggcttttgtgtttctgatgttctttcagagtggccctcaggctccattgttagcctctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tggcttttgtgtttctgatgttctttcagagtggccctcaggctccattgttagcctctt 551

                                                                       
Query: 124 ctctacagagccttgtgttagcagtgtgtagcagctccaggaaccaagtgcaaggttttg 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 550 ctctacagagccttgtgttagcagtgtgtagcagctctaggaaccaagtgcaaggttttg 491

                                                                       
Query: 184 gttatacagccttcattcacagaagttctgcagtagcatcattctttgtcttcaggttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gttatacagccttcattcacagaagttctgcagtagcatcattctttgtcttcaggttat 431

                                                                       
Query: 244 agtgtgtggttttcctttccagtacaaacatttaagtgaaatattttagagttacactgc 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 430 agtgtgtggttttcctttccagtacaaacagttaagtgaaatattttagagttacactgc 371

                                                                       
Query: 304 caccattgtactctgaagtcttttcttcaagtaggggatccattgacttaatctgtcagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caccattgtactctgaagtcttttcttcaagtaggggatccattgacttaatctgtcagt 311

                                                                       
Query: 364 tgctttagagcttttagttagggatgagctagctagaggctctagaatgttttggagtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 310 tgctttagagcttttagttagggatgagctagctagaggctctagaatgttttggagtag 251

                                                          
Query: 424 aaataaacaaatgaacactaaatattcttgcctctttctcatagcat 470
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaataaacaaatgaacactaaatattcttgcctctttctcatagcat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)