Query= MSMg01no059_p09.b1 MSMg01no059_p09.b1 CHROMAT_FILE:
MSMg01no059_p09.b1 PHD_FILE: MSMg01no059_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
(657 letters)
>mm_chr7_94994682_94995738
Length = 1057
Score = 1220 bits (631), Expect = 0.0
Identities = 649/655 (99%), Gaps = 1/655 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacttctggcagaa-ttaaacatgaattagcatagttgctattttaattctgac 62
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaatttacttctggcagaagttaaacatgaattagcatagttgctattttaattctgac 262
Query: 63 tatgctaaaagatgttaagctttaaatatataaaaattatttctgaaaatagtttaaatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatgctaaaagatgttaagctttaaatatataaaaattatttctgaaaatagtttaaatc 322
Query: 123 tatttcatttgtgctgggaccaattgtaactctagatatgttgcaatgctgagaatatat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatttcatttgtgctgggaccaattgtaactctagatatgttgcaatgctgagaatatat 382
Query: 183 tgtgtattaatattttataatactgttacatatactttaaaaaatatcaacactgcctct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgtattaatattttataatactgttacatatactttaaaaaatatcaacactgcctct 442
Query: 243 atgcaaatcaatgacaggattttcaatcattacttccctaatttgtgccaagagatcatc 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 atgcaaatcaatgacaggattttcaatcattacatccctaatttgtgccaagagatcatc 502
Query: 303 aggtacttatttcctaatcacacagcttgagtgtttgtagtagtagtagctggttcatat 362
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggtacttattttctaatcacacagcttgagtgtttgtagtagtagtagctggttcatat 562
Query: 363 ttccaagttcagaagacaaaattgaaactcactgaggccagagcagataagtcctctgct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttccaagttcagaagacaaaattgaaactcactgaggccagagcagataagtcctctgct 622
Query: 423 gtatatgtgtctcgggccttatatcagctggtgtatgctgcctggttggtggctcagtgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtatatgtgtctcgggccttatatcagctggtgtatgctgcctggttggtggctcagtgt 682
Query: 483 ctgagagatcttaaaggtccaggtcagttgagactgctggtcttcccatggggctgccct 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgagagatcttgaaggtccaggtcagttgagactgctggtcttcccatggggctgccct 742
Query: 543 ccttctcagcttcttccagctttccgcaaattcaaccacgggggtcccaggcttctgtcc 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 743 ccttctcagcttcttccagctttccgcaaattcaaccacaggggtcccaggcttctgtcc 802
Query: 603 attgtttggtgctagtatctgcacctgactctttcagctgcttgttgagcttttc 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attgtttggtgctagtatctgcacctgactctttcagctgcttgttgagcttttc 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_p09.g1 MSMg01no059_p09.g1 CHROMAT_FILE:
MSMg01no059_p09.g1 PHD_FILE: MSMg01no059_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
(482 letters)
>mm_chr7_95126319_95127200
Length = 882
Score = 901 bits (466), Expect = 0.0
Identities = 478/482 (99%)
Strand = Plus / Minus
Query: 1 tgtagactgcagctgcctgtgtggataatgatgagtcaattgttaccaatgcagtgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tgtagactgcagctgcctgtgtggataatgatgagtcaattgttaccaatgcagtgagtg 814
Query: 61 attctctttgtggagaaataactatatcagcaatttcccgttcaaaaggtgagcacgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 attctctttgtggagaaataactatatcagcaatttcccgttcaaaaggtgagcacgcct 754
Query: 121 ctccaaaggtagcataatcacaaatgactaagcagcttatgtatgaaatgaataaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctccaaaggtagcataatcacaaatgactaagcagcttatgtatgaaatgaataaatatt 694
Query: 181 tattttaatatgaggaagtgctgaggaagtaaagatataaagacagatgtcctgtaacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tattttaatatgaggaagtgctgaggaagtaaagatataaagacagatgtcctgtaacgc 634
Query: 241 tgtggtttacaatgatgtatgcaaggaatgcattttggaaaatgatggactagaagtgat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgtggcaaacaatgatgtatgcaaggaatgcattttggaaaatgatggactagaagtgat 574
Query: 301 gagcagataggacagagctaggagtaagacatgtcaattttcaagttattgtatgacaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gagcagataggacagagctaggagtaagacatgtcaattttcaagttattgtatgacaaa 514
Query: 361 acccagcaaaaggtaaatgaaggaagtagaatgggacataagtgttttcagtgagaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 acccagcaaaaggtaaatgaaggaagtagaatgggacataagtgttttcagtgagaagaa 454
Query: 421 gataacatagtgattagaaattctaagatatgggctcagcagagaggtcaaggagaccac 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 453 gataacatagtgattagaaattctaagaaatgggctcagcagagaggtcaaggagaccac 394
Query: 481 aa 482
||
Sbjct: 393 aa 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
