BAC Information

Click to search

BAC

Clone NameMSMg01-060B22
Chromosome7 (Build37)
Map Location 138,954,196 - 138,954,483
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060B22.T7 (MSMg01no060_b22.b1)MSMg01-060B22.TJ (MSMg01no060_b22.g1)
ACCAG286639AG286640
length827698
length of high quality
(start - end)
145 (42 - 186)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no060_b22.b1 PHD_FILE: MSMg01no060_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:47 2005CHROMAT_FILE: MSMg01no060_b22.g1 PHD_FILE: MSMg01no060_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATAATTTGCGGACGCTATACGACTCGCTATTCGAAGAGGATCCGCG
GAATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCATAAACTTTGGAGTTTCA
TTAGGTCGCCTTTGTGGGTTCTCGATCTTACAGGACAAGCCATTGATGGG
GTGTTCAGGAATTTTTCTCTTGTGCCCATCTCTTCTATGCTCTTCCTCAT
TTTTCACCTCTGGGAAATTAAGGGAAAACTGGGTTAATACTGGGGATCCG
TGGATACAGCGTAAATTGCGACAATTCGGGAATGGGAAATTGGGAAAAAA
TCGGAATACCGGATTCTGGCTACAGGGAGTAAAAAGGGCAAAAGATGGGG
AGCATTTGACGGGCGTAAAAAAAGGGGTTGGAAAAATTCGGGTCAACTCG
GGATGCTTCTACTTTTTTACACTCTGTTTCAAATTGTTGGGCCCACAACA
CCTGGGTAATATAAATATATTATACTCGCCCAAGCGGCAAAATAAAGTGT
AAAAATCCGGGATAAAAAATAGAAAAAATTCGGCAACCTGCGAAAAGGTT
TAAACGGGGGGTGCTATATCTGGGGAAATACACCGATATATCATAGGGGG
ATAACCGGGTATAAACAAGTCGGGAAACAACGGGGTAAAATTATTTGCGG
AAAACAGGGTAAAATTTGGGGGGAAAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTAAAAGTGAGTTGACCTAATGTTTGC
ATAGCAAAATTTATCACCTTAAAATTGATTTTTATCTTATGAACACACCT
AAGACAAAAAAACAAAGTGTGTTCGCAGAGAACAAAGACCACTTACCTTT
GACTTTGCGATAAGCAAACCTTCTAACTATAAAGTAGCGTTTCTCAATCC
TTTACATCTCCCGGGGGGTCCGGTCCAGCTATTCATCAAAACCACCTGGG
AGGCTTAGTGAAAAGCATGGACTCCTAGACCCCCAAGCAGGGCCTTCTGG
ACTCAGAATCTGTTTTTAATGGGGCTCAGAAACACACATCCCAGAACTGT
CCCTGGATGACCCACATGCAGCAACATGACACTGGCTCAATGACCATAGG
AAGAACACTGTGAGAATCAAGGACTGTTCTGGAGTAGCTGCCCCAGGGGA
GGGCTTCTGCCCCGCACTGGCCCAGCCACATAGGCAAGAATAACGCACGG
GGCTCGGGGGGAGTTGAGAGGGAGAAAATGCTATCCGCTGCCCAAACAGC
CAGTTTCGTTTCCCCTCCTATTTGGGAAAGTTAAGCATCATTTACAAATC
CCACCTTCCCTTAGAAACTGCCCAGAGAATCCAGTGCGGACACAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_b22.g1 MSMg01no060_b22.g1 CHROMAT_FILE:
MSMg01no060_b22.g1 PHD_FILE: MSMg01no060_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:47 2005
         (288 letters)



>mm_chr7_138954072_138954759
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaaaagtgagttgacctaatgtttgcatagcaaaatttatcaccttaaaattgattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 412 ttttaaaagtgagttgacctaatgtttgcatagcaaaatttatcaccttaaagttgattt 353

                                                                       
Query: 61  ttatcttatgaacacacctaagacaaaaaaacaaagtgtgttcgcagagaacaaagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttatcttatgaacacacctaagacaaaaaaacaaagtgtgttcgcagagaacaaagacca 293

                                                                       
Query: 121 cttacctttgactttgcgataagcaaaccttctaactataaagtagcgtttctcaatcct 180
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 292 cttacctttggctttgcgataagcaaaccttctaactataaagtagcgtttctcagccct 233

                                                                       
Query: 181 ttacatctcccggggggtccggtccagctattcatcaaaaccacctgggaggcttagtga 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 232 ttacatctcccggggggtccggtctagctattcatcaaaaccacctgggaggcttagtga 173

                                                           
Query: 241 aaagcatggactcctagacccccaagcagggccttctggactcagaat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aaagcatggactcctagacccccaagcagggccttctggactcagaat 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)