Query= MSMg01no060_f14.b1 MSMg01no060_f14.b1 CHROMAT_FILE:
MSMg01no060_f14.b1 PHD_FILE: MSMg01no060_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:03 2005
(569 letters)
>mm_chr7_121816735_121817703
Length = 969
Score = 984 bits (509), Expect = 0.0
Identities = 549/565 (97%), Gaps = 5/565 (0%)
Strand = Plus / Plus
Query: 5 gaattcggtgtcaccggaagctattattaaaacagcaagacaagccctccttggtttctg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggtgtcacaggaagctattattaaaacagcaagacaagccctccttggtttctg 264
Query: 65 tcttccttgtactatcagcatctcaccctgatgtgcttctatctctgtgatgatatctat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttccttgtactatcagcatctcaccctgatgtgcttctatctctgtgatgatatctat 324
Query: 125 cctaggcttctctccagaggctgagttaatgaggtaactccatttaggatcttcaccctt 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 cctaggcttctctccagaggctgagttaatgaggtaactccatttaggaccttcaccctt 384
Query: 185 ccttaccataaggcaaactaaatcattgtttataaaattccccgcctgcagtattttctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttaccataaggcaaactaaatcattgtttataaaattccccgcctgcagtattttctt 444
Query: 245 atgccaactgggagcagaccaacataactccaatttttcttctcttaaaatatgtttaaa 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 445 atgccaactgggagcagaccaatataactccaatttttcttctcttaaaatatgttttaa 504
Query: 305 gaagtagttagtttaaaaaacaaactcctatttgtacagtttaaataactagacatgtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagtagttagtttaaaaaacaaactcctatttgtacagtttaaataactagacatgtta 564
Query: 365 aaccacccgtagttttcttctagcataaaaaggcatatcatttttattttttatattatt 424
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactaaatgtagttttcttctagcataaaaaggcatatcatttttattttttatattatt 624
Query: 425 ttgttaatagaaaattatcttattctatacccgtgatggttaatattctcagttggagag 484
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 625 ttgttaatagaaaattat-----tctatacctgtgatggttaatattctcagttggagag 679
Query: 485 accttagaattgtctgggaaacaaggcattgaaggttaatttaggttagtctccaggcat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 accttagaattgtctgggaaacaaggcattgaaggttaatttaggttagtctccaggcat 739
Query: 545 gccctggaagaattatctttattag 569
|||| ||||| ||||||||||||||
Sbjct: 740 gccccggaaggattatctttattag 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_f14.g1 MSMg01no060_f14.g1 CHROMAT_FILE:
MSMg01no060_f14.g1 PHD_FILE: MSMg01no060_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:04 2005
(351 letters)
>mm_chr7_121966402_121967151
Length = 750
Score = 648 bits (335), Expect = 0.0
Identities = 347/351 (98%), Gaps = 1/351 (0%)
Strand = Plus / Minus
Query: 1 gattagtccgcccacacaggacagcaggctaactctggtccttgtttctgatctccaggc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gattggtccgcccacacaggacagcaggctaactctggtccttgtttctgatctccaggc 491
Query: 61 ctatgcctccctctatggagcctttgagaaaaaaatgggaggagctggaataaatggcca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 490 ctatgcctccctctatggagcctttgag-aaaaaatgggaggagctggaataaatggcca 432
Query: 121 ggtcaaaggaggtcactcagctcagctcctatgaaaggccgaggagcagtcctgcctgag 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 431 ggtcaaaggaggtcactcagctcagctcctatgaaaggctgaggagcagtcctgcctgag 372
Query: 181 gccagctccttcaaacactagtccaatttcaggactgtctccagcccctaattgcctgct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 gccagctccttcaaacactagtccaatttcaggactgtctccagcccctaattgcccgct 312
Query: 241 tcccattgctagccataaagttggtgccaagagagtactctaatcaaagcacttacacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcccattgctagccataaagttggtgccaagagagtactctaatcaaagcacttacacat 252
Query: 301 tcctaaggaaatggctgctgaaagcacttacagataattagctcttacatg 351
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcctaaggaaatggctgctgaaagcacttacagataattagctcttacatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 750
Length adjustment: 9
Effective length of query: 342
Effective length of database: 741
Effective search space: 253422
Effective search space used: 253422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
