BAC Information

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BAC

Clone NameMSMg01-060I14
Chromosome7 (Build37)
Map Location 117,212,895 - 117,301,134
singlet/doubletdoublet
Overlap geneZfp143, Wee1
Upstream geneRic3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408
Downstream geneSwap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I14.T7 (MSMg01no060_i14.b1)MSMg01-060I14.TJ (MSMg01no060_i14.g1)
ACCAG286957AG286958
length717761
length of high quality
(start - end)
331 (69 - 399)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no060_i14.b1 PHD_FILE: MSMg01no060_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:17 2005CHROMAT_FILE: MSMg01no060_i14.g1 PHD_FILE: MSMg01no060_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,212,895 - 117,213,225)(117,300,887 - 117,301,134)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGTTTCAAACTCAGGTCATCAGACTTGAACATAAGTGCCTTTAT
CTGCTGAACTATCTCAGCTTGGATTCATGTGCACGATTCCTTCTTCTCAA
GTGCTCATATTTTTCTTCAAGGTAGAAAATGTTGTTAGCACAAATAAATC
GGGATTCTCAGGGGATGACAGAATTTCCTGGAGGAGGAATGGAGGCTCAA
CATGTTACCCTGTGCCTGACGGAGGCAGTAACCGTGGCAGGTAAGCCATC
TTCCTTGAAGAAGCGTGGAGGTTTCAATTAAAGATTATTTTTTAAAGATT
TATTTATTTGTTTTATGTATGAGTAAAGTACACTGAAGCTGTCTTCAGAC
ATACCAGAAGAGGGCATCAGATCCCATGTGAGCCACCATGTAGTTGCTGG
GAATTGAATTCCCGACCTCTGGAACAGCACTCCGTGGTTCTAATCGTTGA
CTCATCTTTCCAGGTCTTTCCAGATCAATGTTACTGTCTGCCGTTGTTAT
TTTTTTACATAATTCCCTATATGACCCCCATGCCGCCTGCCTGACTTCTT
CACCCCCTTTGTTCTTCCGACCTTTTCCCTTTGATCAACATCCTTTTTTT
TTCTTTTTTTCCCCCACTTTCACATTTTCTCTCTCTTTATCCAACACCAT
TCTCTTATCTCCCCTTG
ATGAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTACTGTGAACTGTGGATGACTTCAG
CAGGAAGTGCTGAACCTCCTCCAGCTGCCCGCCTCAGGCTGACGGGAGTC
ACTGAAGTCACACCTTTAGAAATGGGTATTGCCTCTCTGTACTACTAGCT
GTTAAGACAGTCTGAGTCACGGTTGAAGTTCAGGACAGATGTCTGTCCTC
TGAAGACACTCCAGGAATTTCCTTGGGCGGGTTTCTCTCTGCACTGTGGG
CTGTCTCAGGCAGACACCAGTACTTACATAAATGGATCGGGAGTGTCCTG
GGAAGGAAGGCTCTGATAAAGAAACTTCCCAGTCCCACTACTGCTGCTCC
TCATGGGTCCTGCTGACAGATAAGGCTACCGAATAATTTGACTCCCGTAC
CGAACGACGTTTTGAGAATATTACCAGAAACCCCTTGACTCGCTCTTGAC
TGTCTCCCTCTGCCCCGCCCGATGTGTACTCTTCCTGTCGTGCTCTGTTT
TGGCTCTCCGCAATCCCCTCTGCAGGGTTGCCACATCCTACCCCCCCCTC
GTCTCTTTTTTCCATTACCCACCCCCTCCTTACTTCCCCTCCACCCCTCC
ATCCCCGCATAACCGCCATCCTTGTTTCTTCCACTTGTGCCTCTTACATC
TACTTGTAAACATAGTGCACTAGTAGACGCCCACCCCCCTCCTTCTCCTC
TTATCCGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i14.b1 MSMg01no060_i14.b1 CHROMAT_FILE:
MSMg01no060_i14.b1 PHD_FILE: MSMg01no060_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
         (331 letters)



>mm_chr7_117212695_117213425
          Length = 731

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcatcagacttgaacataagtgcctttatctgctgaactatctcagcttggattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcatcagacttgaacataagtgcctttatctgctgaactatctcagcttggattcat 260

                                                                       
Query: 61  gtgcacgattccttcttctcaagtgctcatatttttcttcaaggtagaaaatgttgttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcacgattccttcttctcaagtgctcatatttttcttcaaggtagaaaatgttgttag 320

                                                                       
Query: 121 cacaaataaatcgggattctcaggggatgacagaatttcctggaggaggaatggaggctc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaataaatcgggattctcagggaatgacagaatttcctggaggaggaatggaggctc 380

                                                                       
Query: 181 aacatgttaccctgtgcctgacggaggcagtaaccgtggcaggtaagccatcttccttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatgttaccctgtgcctgacggaggcagtaaccgtggcaggtaagccatcttccttga 440

                                                                       
Query: 241 agaagcgtggaggtttcaattaaagattattttttaaagatttatttatttgttttatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagcgtggaggtttcaattaaagattattttttaaagatttatttatttgttttatgt 500

                                          
Query: 301 atgagtaaagtacactgaagctgtcttcaga 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 atgagtaaagtacactgaagctgtcttcaga 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_i14.g1 MSMg01no060_i14.g1 CHROMAT_FILE:
MSMg01no060_i14.g1 PHD_FILE: MSMg01no060_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
         (248 letters)



>mm_chr7_117300687_117301334
          Length = 648

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtactgtgaactgtggatgacttcagcaggaagtgctgaacctcctccagctgcccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgtactgtgaactgtggatgacttcagcaggaagtgctgaacctcctccagctgcccgc 389

                                                                       
Query: 61  ctcaggctgacgggagtcactgaagtcacacctttagaaatgggtattgcctctctgtac 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctcaggctgacaggagtcactgaagtcacacctttagaaatgggtattgcctctctgtac 329

                                                                       
Query: 121 tactagctgttaagacagtctgagtcacggttgaagttcaggacagatgtctgtcctctg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 328 tactagctgttaagacagtctgagtcacgggtgaagttcaggacagatgtctgtcctctg 269

                                                                       
Query: 181 aagacactccaggaatttccttgggcgggtttctctctgcactgtgggctgtctcaggca 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 268 aagacactccaggaatttccttgggtgggtttctctctgcactgtgggctgtctcaggca 209

                   
Query: 241 gacaccag 248
           ||||||||
Sbjct: 208 gacaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)