Query= MSMg01no060_m23.b1 MSMg01no060_m23.b1 CHROMAT_FILE:
MSMg01no060_m23.b1 PHD_FILE: MSMg01no060_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:37 2005
(367 letters)
>mm_chr7_73287153_73287919
Length = 767
Score = 685 bits (354), Expect = 0.0
Identities = 360/362 (99%)
Strand = Plus / Minus
Query: 6 ggaattcaccattgtccctggttatgtgttgctatggagacttcttccatgctagccgag 65
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggaattcaccattgtatctggttatgtgttgctatggagacttcttccatgctagccgag 597
Query: 66 ctctctaagtgaactacacccccagcctctttttgattttgaaatcttttccttttccct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctctctaagtgaactacacccccagcctctttttgattttgaaatcttttccttttccct 537
Query: 126 tgcacgtgaccttgaacgtggtcacactatatatgattaccactgcatgcatagcctgat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgcacgtgaccttgaacgtggtcacactatatatgattaccactgcatgcatagcctgat 477
Query: 186 gtgctctccatgaggctgcgtgacggtcactgtgtgcgtggatgagccccacccacccta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtgctctccatgaggctgcgtgacggtcactgtgtgcgtggatgagccccacccacccta 417
Query: 246 ctctggtttcctacagcatcctgctccctcctaactccatctgtactcctaagacacacg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctctggtttcctacagcatcctgctccctcctaactccatctgtactcctaagacacacg 357
Query: 306 agtgtgcacacctttctctgtggaacaagctcttactcacctgtgatctcctgtggctgc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agtgtgcacacctttctctgtggaacaagctcttactcacctgtgatctcctgtggctgc 297
Query: 366 ct 367
||
Sbjct: 296 ct 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_m23.g1 MSMg01no060_m23.g1 CHROMAT_FILE:
MSMg01no060_m23.g1 PHD_FILE: MSMg01no060_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:38 2005
(601 letters)
>mm_chr7_73115607_73116601
Length = 995
Score = 980 bits (507), Expect = 0.0
Identities = 575/607 (94%), Gaps = 18/607 (2%)
Strand = Plus / Plus
Query: 1 ctcagcctcgtatcggaacatctcatccatggggttagcatagccaaccagaccagacat 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagcctcgtatcggaacgtctcatccatggggttagcatagccaaccagaccagacat 260
Query: 61 ctgctttgcccacagggatacaggagtaacagccacaggatccttcctcttcacctgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctttgcccacagggatacaggagtaacagccacaggatccttcctcttcacctgcta 320
Query: 121 gaggttgtcaccatagccacagaccagtcccattgccccagagcttgtgtgtgaatgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggttgtcaccatagccacagaccagtcccattgccccagagcttgtgtgtgaatgaga 380
Query: 181 gcagtgaggcctgccccttctccgtagcaggctagtgtgtgtgtgtgtgtgtggggggca 240
||||||||||||||||||||||||||||||||||||| | | | | | ||||||||
Sbjct: 381 gcagtgaggcctgccccttctccgtagcaggctagtg-----gggggcg-ggggggggca 434
Query: 241 gctcacagactacacagcatctctacattgcttttatccagccccataaaccttctgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gctcacagactacacagcatctctacattgcttttatccagccccataaaccttctgatg 494
Query: 301 gcttaagcaactggaatgtttaagcaggccccgagccccccc------ctgcaggacgct 354
||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 495 gcttaagcaactggaatgtttaagcaggccccgag------cagggggctgcaggaccct 548
Query: 355 ggcttcatctccttttctgtgctaccctttggaggaagctttttaaaccagttacatgtg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggcttcatctccttttctgtgctaccctttggaggaagctttttaaaccagttacatgtg 608
Query: 415 ttggccgagacaaaacaaccaaaactggactgtgacatgaatctgatgggaaaaacccac 474
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 609 ttggccgagacaaaacaaccaaaactggactgtgacatgaatctgatgggaagaagccac 668
Query: 475 gcagctcagaagtcagattattcctgaactgtgccattgcagctgtgcttcctaagagta 534
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcagcttggaagtcagattgttcctgaactgtgccattgcagctgtgcttcctaagagtg 728
Query: 535 tgaaccaggcgatttgttacctttgccaatgtgtgcttgaatgaggcttgatggggtaat 594
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgaaccgggcgttttgttacctttgccaatgtgtgcttgaatgaggcttgatggggtaat 788
Query: 595 cagcagg 601
|||||||
Sbjct: 789 cagcagg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 995
Length adjustment: 10
Effective length of query: 591
Effective length of database: 985
Effective search space: 582135
Effective search space used: 582135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
