BAC Information

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BAC

Clone NameMSMg01-061O13
Chromosome7 (Build37)
Map Location 69,327,155 - 69,327,747
singlet/doubletsinglet
Overlap genenone
Upstream geneD0Kist2, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061O13.T7 (MSMg01no061_o13.b1)MSMg01-061O13.TJ (MSMg01no061_o13.g1)
ACCAG288008AG288009
length726725
length of high quality
(start - end)
604 (40 - 643)601 (69 - 669)
definitionCHROMAT_FILE: MSMg01no061_o13.b1 PHD_FILE: MSMg01no061_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:01 2005CHROMAT_FILE: MSMg01no061_o13.g1 PHD_FILE: MSMg01no061_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGACAATCCGCGGAATTCT
TTGTTTATCTCCGAGCCCCATTTTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTCGAGTTCTTTATATATATATATTGGATATTAGTGCTCT
ATCTGATTTAGGATAGGTAAAGATCATTTCCCAATCTGTTGGTGGACTTT
TGTCTTATTGACAGTGTATTTTGCCTTATAGAAACTTTTCAGTTTCATGA
GGTCCCATTTGTCAATTCTCGATCTTACAGCATAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCCCCTGTGCCAATATCTTCGAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGATTTTATGTGGAGCTCCTTTATCC
ACTTAGATTTGCCACCACCACAAGGAGATAGGAACAGATCAATTCGCATT
CTTCTACATGTTGACAACCAGTTGTGACAGCACCATTTGTTGAAAATGCT
GTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTAGCTATACCAGTACCATGCTGTCTTTATCACAATTTCTCT
GTAGCAAAGCTTTACGTTATTCCACCAGAGGTTCTTTTATCCTTGAGAAG
AGTTTTTGCTACTCCCAGTTTTTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTGGGACAAGTTCCTTAATAAGTTGTCAAG
TCTTGAGAAAATAGCTTTTGCACACATACACAGGAGCAATACCTAATGGA
CTTAATAGTCAGTAATTATGCATACATAACTGTATTATATGAGAGTGGAC
CATGAGTTTGGGAGCAAATAGGGTGCAAAAGAAAGAAATTGCAGGTAGAG
AAAACAGCAGAAATAATGTAAAGGCATCACCTTTGTAATTTCATTTGATT
GTTGAAATATTCATTGAAATACATTTCAAATATACTTCAAAAGTAATTTA
AATGGAGTTACCATATGTTGAGTGAGACAATTACAACCTAGATATATTAT
GACACCAAATAAAAACCCCACCATCAGGAGTGGATTACTTCTGTGTAGCA
ATAGCTAATGGTGCTGCCCACCCCTCCCGATAAAACACATTATTGTCAAG
ACTATCAGTTACTCTCTACAAACTGAATATATCATGAATTTATAACATTA
AACATGAACAAATTGATCTGGTTCCCAAGTAGAAGATTCACTAGCCCCAA
TGAGCAGCCATAGTGTTGATAATTACTTGGCACACTACTGGAAAAAATAA
TCATCAGTTTTTTCCTATATACAACCCGTGAAACATATAGCAATAACCTC
TATGTAAGATAGATCATTGCAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_o13.g1 MSMg01no061_o13.g1 CHROMAT_FILE:
MSMg01no061_o13.g1 PHD_FILE: MSMg01no061_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:01 2005
         (601 letters)



>mm_chr7_69326955_69327955
          Length = 1001

 Score = 1025 bits (530), Expect = 0.0
 Identities = 578/594 (97%), Gaps = 1/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgggacaagttccttaataagttgtcaagtcttgagaaaatagcttttgcacacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcctgggacaagttccttaataagttgtcaagtcttgagaaaatagctttttcacacata 260

                                                                       
Query: 61  cacaggagcaatacctaatggacttaatagtcagtaattatgcatacataactgtattat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcaggagcaatacctaatggacttaatagtcagtaattatgcatacataactgtattat 320

                                                                       
Query: 121 atgagagtggaccatgagtttgggagcaaatagggtgcaaaagaaagaaattgcaggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagagtggaccatgagtttgggagcaaatagggtgcaaaagaaagaaattgcaggtag 380

                                                                       
Query: 181 agaaaacagcagaaataatgtaaaggcatcacctttgtaatttcatttgattgttgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaacagcagaaataatgtaaaggcatcacctttgtaatttcatttgattgttgaaat 440

                                                                       
Query: 241 attcattgaaatacatttcaaatatacttcaaaagtaatttaaatggagttaccatatgt 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 attcattgaaatacatttcaaatatacttcgaaagtaatttaaatggagttaccatatgt 500

                                                                       
Query: 301 tgagtgagacaattacaacctagatatattatgacaccaaataaaaaccccaccatcagg 360
           |||||||||||||||||||||||| ||||||||||||||||||||||   ||  ||||||
Sbjct: 501 tgagtgagacaattacaacctaga-atattatgacaccaaataaaaatttcagtatcagg 559

                                                                       
Query: 361 agtggattacttctgtgtagcaatagctaatggtgctgcccacccctcccgataaaacac 420
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 agtggattacttctgtgtggcaatagctaatggtgctacccacccctcccgataaaacac 619

                                                                       
Query: 421 attattgtcaagactatcagttactctctacaaactgaatatatcatgaatttataacat 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attattgtcaacactatcagttactctctacaaactgaatatatcatgaatttataacat 679

                                                                       
Query: 481 taaacatgaacaaattgatctggttcccaagtagaagattcactagccccaatgagcagc 540
           |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 680 taaacatggacaaattgatctggttcccaagtagaagattcactaaccctaatgagcagc 739

                                                                 
Query: 541 catagtgttgataattacttggcacactactggaaaaaataatcatcagttttt 594
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 catagtgttgataagtacttggcacactactggaaaaaataatcatcagttttt 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)