BAC Information

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BAC

Clone NameMSMg01-062M19
Chromosome7 (Build37)
Map Location 122,280,912 - 122,415,643
singlet/doubletdoublet
Overlap geneLOC668472
Upstream geneLOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062M19.T7 (MSMg01no062_m19.b1)MSMg01-062M19.TJ (MSMg01no062_m19.g1)
ACCAG288689AG288690
length1,1341,181
length of high quality
(start - end)		746 (86 - 831)664 (87 - 750)
definitionCHROMAT_FILE: MSMg01no062_m19.b1 PHD_FILE: MSMg01no062_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:46 2005CHROMAT_FILE: MSMg01no062_m19.g1 PHD_FILE: MSMg01no062_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,415,081 - 122,415,643)(122,280,912 - 122,281,575)
sequence
NCCTATTATNTTNATACATTGGGCGCTATAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCACATAGTTGTGAGGCCCTTTAAGAGGCTAGATAGCTCTT
TCAGTTGAAAGACTACCGGTAGAAATGAATTAGCCCTCCCAGTCATAAAG
AATAATCCCTCTTAAGGATGGAGTAAAAGTTAACAGATCACCTGCTCCCT
GAGAAGAGCTTCAGAAGTCAGGAATGTGCTGTTTGAAAATGAAGGTTTAG
ATGTAAAACTTATCCCACTGTCTGATAATAAAATCCAGCCATTTAAGAAA
ACTACAAAGGGGTTATGAAGAAGGTGATCCCCAGGACTCAAATAACAGCC
TGGAGTTGCAGCATATGCCTATCACGGCAGCACTGGAAGGAGGGACAGAA
ACAAGTGTATCTCTGTAACTGGTCTAGCCAGACTGATGAGCTCTTGTGCA
GTGAAAGATCCCTATATCCATGAAGTACTCACACAGGGAGAGAAGAGGGC
AGGGAGACGAAGGGACATACACATATATGTGCATTAAAATAAACAATCAA
ACAAAACCCCACTAGGGTCACGATGATGAAAAAGAAAAATGTATAAAGCC
AATTGTAGAGAGCTCTCTATTCTGGTCCTGAATTTTACTTTTTTCATGAA
CTAGACTTCTTGGCCCATTTAAAATAGGTAGGAAGACACAGACCTGCCTA
ATGGAGACTGTAAGAATTGAAAGTCAGAGAGTTGAGTCAACAGAGCTTGT
ATTCTTATTCCTCAACAACTCCATAGTTTGGTAGGTAAAAACATGGACTG
AAGAAAATGCTGTACCTTTCTCACACTGGAAATAAAAGAAGAACCCATTC
CCGTCAATGAAAAGTATGCATGAGGAACAGATAACCCATTGCTCCCCACA
TACGGACTCTGAACTGGAACATGTAGCTGGTGCCCTTGCCGAAAACTAGT
TGAAAACCTCCAAGGGTTTATCCAACCCTTGCTGTGGGTAATTTTTCTGG
GTAAAGGTAATAAACCTTTTGAGCTTTTTTTTTTAGAAATTTTTTAAAAA
AACTTGTATTTGTTGGGTAAAAAATTTTTTTTTGTGGTGGGGGTGATTTC
CATAAAATTTTTTTAGGGTTTTCCCCTTAAAAAG

CCAGTCTTTTTTNTACACAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATAAGCTCAAGCTCATGGT
ACAGGAGCATGAGGCACCTGTTCACATTACATCCCCCGCCAGAAGAGAGT
AATGGCTGTGTCTATGCTAGCGTTGTTTAGTTTGCTGTCTCCATTTTATA
CAGTTTGGGATCCCTGCCCAAGGAATGGTCCCACTAACAATTAGAACAAC
TCTTCCCACATCAATTCACATGATCAAAATAATCCCCCAGAAGCATGCTC
AGAGACCTGGTGATTCTAGATTCTGTCCAGTTGGCAAGGAACACTGCCAG
TCACACGTACCCAATTTTATTTTTCTTCGTTTAAAGGAAGGAGGATGTCT
ACTTCCTAGGGTTGTAACAAAGTCATGCCATATCAGGAATTCCGGTTTTT
AGTTCCAGAAATAGCCATAATAATGGAAACATAGCCTGACTGAGTTCCCT
TACACAGAAGGCTATGTAGAGGTAAGCAGCTGCAGAGGTAGCTTAATGGT
GTCACTGATGTCTTGCCAGTTCTCTTTCCTGTTCCTTCATGGTCCACTAT
GACTGTCACATCACCCTCCATCACATCTGTATTTGGATAGGAAGTGGTAA
GGAGAAAAAAAGATTCTGTTGGGAAATCAAAAACTACCCAAAGAGCCTCA
CAAGCTTGCATTTATCATGTGGAGGGCCACTTGGCCACAGCTGGTTGGAA
GGTGCCTAAGAAGGAGTTAAAAATTAGACAGCTAACTTTGGCTGCCCTGG
ATAAAGCCTTCATGTTAGTGTGGGATGAATCACATTTATCTGCTTTGTGA
ATTCTGACAAGTGTGCCAGGAGCTACTGGACAGGCAATATTGATGCCAGT
GTGTTGCTTTCTGGCATTTCATTGAATAATGAACTAACCTACTTGAAGCT
AAGGTGTTTATTTGCAAGAACTCTTTTGGAATTGGAAATTAAAAATTATT
AGTGTATTCCTTTATTTCTATTATTGCCCCGGGCTAAATAATTCCAAAAT
TATTTTTTGTTTTTAAAGGGTTATTTTTTGTTTTCAGTTTTTAGTTTAAA
TCCCCCTCTCTTGTGGTTGAAACTATTTGTGTATAAAAATTCTGGTAATT
GGTGTTGTAACTCTTCTTATTTTTCTCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_m19.b1 MSMg01no062_m19.b1 CHROMAT_FILE:
MSMg01no062_m19.b1 PHD_FILE: MSMg01no062_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:46 2005
         (746 letters)



>mm_chr7_122414498_122415643
          Length = 1146

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Minus

                                                                        
Query: 184  tgtctgataataaaatccagccatttaagaaaactacaaaggggttatgaagaaggtgat 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 tgtctgataataaaatccagccatttaagaaaactacaaaggggttatgaagaaggtgat 1087

                                                                        
Query: 244  ccccaggactcaaataacagcctggagttgcagcatatgcctatcacggcagcactggaa 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ccccaggactcaaataacagcctggagttgcagcatatgcctatcacggcagcactggaa 1027

                                                                        
Query: 304  ggagggacagaaacaagtgtatctctgtaactggtctagccagactgatgagctcttgtg 363
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 ggagggacagaaacaagtggatctctgtaactggtctagccagactgatgagctcttgtg 967

                                                                        
Query: 364  cagtgaaagatccctatatccatgaagtactcacacagggagagaagagggcagggagac 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  cagtgaaagatccctatatccatgaagtactcacacagggagagaagagggcagggagac 907

                                                                        
Query: 424  gaagggacatacacatatatgtgcattaaaataaacaatcaaacaaaaccccactagggt 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  gaagggacatacacatatatgtgcattaaaataaacaatcaaacaaaaccccactagggt 847

                                                                        
Query: 484  cacgatgatgaaaaagaaaaatgtataaagccaattgtagagagctctctattctggtcc 543
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  cacgatgataaaaaagaaaaatgtataaagccaattgtagagagctctctattctggtcc 787

                                                                        
Query: 544  tgaattttacttttttcatgaactagacttcttggcccatttaaaataggtaggaagaca 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  tgaattttacttttttcatgaactagacttcttggcccatttaaaataggtaggaagaca 727

                                                                        
Query: 604  cagacctgcctaatggagactgtaagaattgaaagtcagagagttgagtcaacagagctt 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  cagacctgcctaatggagactgtaagaattgaaagtcagagagttgagtcaacagagctt 667

                                                                        
Query: 664  gtattcttattcctcaacaactccatagtttggtaggtaaaaacatggactgaagaaaat 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  gtattcttattcctcaacaactccatagtttggtaggtaaaaacatggactgaagaaaat 607

                                   
Query: 724  gctgtacctttctcacactggaa 746
            |||||||||||||||||||||||
Sbjct: 606  gctgtacctttctcacactggaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space:   836096
Effective search space used:   836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no062_m19.g1 MSMg01no062_m19.g1 CHROMAT_FILE:
MSMg01no062_m19.g1 PHD_FILE: MSMg01no062_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:46 2005
         (664 letters)



>mm_chr7_122280712_122281775
          Length = 1064

 Score = 1183 bits (612), Expect = 0.0
 Identities = 651/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaagctcatggtacaggagcatgaggcacctgttcacattacatcccccgccagaaga 60
           ||||||||||||||||||||||||||||||  |||||||||||||||| | | |||||||
Sbjct: 201 ctcaagctcatggtacaggagcatgaggcagttgttcacattacatccacagtcagaaga 260

                                                                       
Query: 61  gagtaatggctgtgtctatgctagcgttgtttagtttgctgtctccattttatacagttt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 261 gagtaatggctgtgtctatgctagcattgtttagtttgctgtctccattttatacagttc 320

                                                                       
Query: 121 gggatccctgcccaaggaatggtcccactaacaattagaacaactcttcccacatcaatt 180
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aggatccctgcccaaggaatggtcccactaacaattaaaacaactcttcccacatcaatt 380

                                                                       
Query: 181 cacatgatcaaaataatcccccagaagcatgctcagagacctggtgattctagattctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatgatcaaaataatcccccagaagcatgctcagagacctggtgattctagattctgt 440

                                                                       
Query: 241 ccagttggcaaggaacactgccagtcacacgtacccaattttatttttcttcgtttaaag 300
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 441 ccagttggcaaggaacactgccagtcacacctacccaagtttatttttcttcgtttaaag 500

                                                                       
Query: 301 gaaggaggatgtctacttcctagggttgtaacaaagtcatgccatatcaggaattccggt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggaggatgtctacttccaagggttgtaacaaagtcatgccatatcaggaattccggt 560

                                                                       
Query: 361 ttttagttccagaaatagccataataatggaaacatagcctgactgagttcccttacaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttttagttccagaaatagccataataatggaaacatagcctgactgagtttccttacaca 620

                                                                       
Query: 421 gaaggctatgtagaggtaagcagctgcagaggtagcttaatggtgtcactgatgtcttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggctatgtagaggtaagcagctgcagaggtagcttaatggtgtcactgatgtcttgc 680

                                                                       
Query: 481 cagttctctttcctgttccttcatggtccactatgactgtcacatcaccctccatcacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagttctctttcctgttccttcatggtccactatgactgtcacatcaccctccatcacat 740

                                                                       
Query: 541 ctgtatttggataggaagtggtaaggagaaaaaaagattctgttgggaaatcaaaaacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtatttggataggaagtggtaaggagaaaaaaagattctgttgggaaatcaaaaacta 800

                                                                       
Query: 601 cccaaagagcctcacaagcttgcatttatcatgtggagggccacttggccacagctggtt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cccaaagagcctcacaagcttgcatttatcatgtggagggccacttggccacagctggtt 860

               
Query: 661 ggaa 664
           ||||
Sbjct: 861 ggaa 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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