BAC Information

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BAC

Clone NameMSMg01-063B21
Chromosome7 (Build37)
Map Location 97,724,009 - 97,724,292
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
Downstream geneLOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B21.T7 (MSMg01no063_b21.b1)MSMg01-063B21.TJ (MSMg01no063_b21.g1)
ACCAG288932AG288933
length725709
length of high quality
(start - end)
290 (36 - 325)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no063_b21.b1 PHD_FILE: MSMg01no063_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:20 2005CHROMAT_FILE: MSMg01no063_b21.g1 PHD_FILE: MSMg01no063_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAG
TTTCTTCTATAAGGGGGCATAGAATTATAGCAAGTAGTGAGATAATAATA
GCTATTTTTGTGATTTTTTTATGGCCAGGTGCTTTTTAATGTCACTTTTG
GTCAATACCAGCATATGGGTATGAACAATTTTCTGGTTTTTCTTAATATT
TTTATTGATTTTTTTTGTGAAGCCCAATCACATTCACTTCCCAGTCCTTC
TAGGTCTACCTCCCTCACTGTGGCTTCCGAAGAAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGACCCCCCCCCCTCCTCCCCCGCTTTTTT
TTTTTTTCCCCCCCCCCCCCCTTTTTTGTTATTATTATATCTCTTCAGCC
TTTTCCTCCCCCAAAAAAAAAATACTATACACGGGGGGGGGTTTTCCCCT
TTCCTTATCCATATACATTACCACCCATCCCCTCCCAATAATTACTTCAC
CCTCATAACCGCTACACTACACTCCTCTCCTCTTATTATTACATTCCATA
TTACACATCTCCTTTATATTCTCCCTTCTCCCATATCCCCTAGTCCATCT
ATATCTATATATATTTCTTTTTCTTATTCCATCCATCTCTACTTTTCCCT
CACCCCATACAATAAATATATACTTCCTACCCTCCTCATATTACAGTCAT
CTCACAATTCTCATAAACCCGAATG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAACCCAAACATCCAGGAAATCTGGGAC
ACAATGGAAAGACCAAACCTAAGGATAATAGGTATAGAAGAAAGCAAAGA
TTCCCAACTTAAAGGGCCAGCAAACAACAAAACTTCAACTTCCTCAACAA
AACTGTAGAAGAAAACTTACCTAACCTAAAAAAAAGAGTTGCCCATTAAC
ATACAAGAAGCCTATAGAACTCCAAATAGACTGGACCAGAAGAGAAACTC
CTCCTGTCACATAATAATCAAAACACCAAATGCATTAAACAAAGAAAAAA
TATTAATAGCTTTAAAGGCAAAAGGTCACGTAACATATAAAGGCAGACCT
ATCATAATTATACCAGACTTCTGACCGAAGAATACGAAAGCTAGAAGACC
CTGGGCAGATGTCATACAGACCCTAAGAGAGCATGAATGCCAGCCCAGGC
TATTATACCCAGCAAAACTCTCAATTACCATAGTCAGAGAAACCAAGACA
TTTCATGACAAAACCAAATTTATAACAAATCTTGCCACAAATCCAGCTGT
ACAAAGGATAATAGATTGAAAACACCAACACCAAGAGGGAAACCTGCCCC
CTAGAAAAAGCAAGAAAGCAACCTTTCCACCAACCTAAAAGAAGATAGCC
CCATAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b21.b1 MSMg01no063_b21.b1 CHROMAT_FILE:
MSMg01no063_b21.b1 PHD_FILE: MSMg01no063_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:20 2005
         (290 letters)



>mm_chr7_97723805_97724491
          Length = 687

 Score =  489 bits (253), Expect = e-143
 Identities = 277/287 (96%), Gaps = 6/287 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaagtttcttctataagggggcatagaattatagcaagtagtgagataataat 64
           ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagttccttctataaggttgcatagaattatagcaagtagtgagataataat 264

                                                                       
Query: 65  agctatttttgtgatttttttatggccaggtgctttttaatgtcacttttggtcaatacc 124
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 agctatttttgtgattttt--atggccaggtgctttttaatgtcacttttggtcaatac- 321

                                                                       
Query: 125 agcatatgggtatgaacaattttctggtttttcttaatatttttattgatttttttt--- 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 322 agcatatgggtatgaacaattttctggtttttcttaatatttttattgattttttttttt 381

                                                                       
Query: 182 gtgaagcccaatcacattcacttcccagtccttctaggtctacctccctcactgtggctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgaagcccaatcacattcacttcccagtccttctaggtctacctccctcactgtggctt 441

                                                          
Query: 242 ccgaagaaggaggaggaggaggaggaggaggaggaggaggaggagga 288
           |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccgaaggaggaggaggaggaggaggaggaggaggaggaggaggagga 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 687
Length adjustment: 9
Effective length of query: 281
Effective length of database: 678
Effective search space:   190518
Effective search space used:   190518
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)