BAC Information

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BAC

Clone NameMSMg01-063D08
Chromosome7 (Build37)
Map Location 66,001,647 - 66,001,871
singlet/doubletsinglet
Overlap geneAtp10a
Upstream geneGabrb3, EG668807, LOC434189
Downstream geneLOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063D08.T7 (MSMg01no063_d08.b1)MSMg01-063D08.TJ (MSMg01no063_d08.g1)
ACCAG289002AG289003
length8131,024
length of high quality
(start - end)
228 (131 - 358)---
definitionCHROMAT_FILE: MSMg01no063_d08.b1 PHD_FILE: MSMg01no063_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:29 2005CHROMAT_FILE: MSMg01no063_d08.g1 PHD_FILE: MSMg01no063_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNNTTTTTTTTTTTNNTTCTT
TTCGCTTACCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAGAGCCTTCCACTTTATTTATGCTAATGAAT
GACTCATGTGCTGCAGAGTGTCTTAAGGGCCCCTTGAGAATCTTAACTAA
TCTGAGACTGGGACAAATCTAAACTTCTCTAGCCCGTCAGATTAGTAAAG
CAATTTTTAGTCACTCATACTAAAGTGTATGTGTCAGAATGCCTTACTCC
CCACTGTTCCTCACCTACTAAAGGCCAAGAAATGTGGGTGTCACTGACTG
ATGATAATTGGCCTCCCCTAACCTCCAAAGTCAGTTACCTGTATATATCA
CAGGAAAGGCTCATACGTCTGTATTTGTTCCCACACCCCCTCTCCACGAT
ATTCTCTCTGCGTCTTTGTCTCTGTCTCCGACTCTGTCTCTCCATATCTG
TCTGCCCCTCCATCTCCGATCTCCTTCTCTGTCTCCTGTCTTTCCTCCTT
TCACTAGTGGATACTTCATCTCCGCATTATTTCCCGAATATTAATAACTT
AGTCATTACCATTGCGCTTTCCTATTTTCCTCTTCCTCATTATTCCACCT
ACGTCTCTCTATTGTTTCACTTCCAACCTTTCGCTCTTCCCACTTTCTAC
TAATCATACCACCCCCCTCGCTCAAACTGCCCTTGACCACAAATTTCTAT
CATTCCGCCCATCTGTCCTTGCCCCCGCAAATTTCCCCTTATTCTTCACC
CCATGTAACACCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCN
NNNNNNNCCCCCCCNNCCCCCCCCCNNNNCNNNNNNNNNCCCCCNNCNNN
NNNNNNNCNNNNCCCACNNCNNNCCCTCCTTTTCNNTNCTTTNNNNNTNC
GNTCTGTTNANNNCNCCNCCCCCCCTTCTTNCNCCCCCCCCTTTCTCTGT
GTCCACGTCCCGTCCCGCCCTCTACCGGCGCGCCCTGGCCGCCCCCGCGC
CCTGTGCTCGCCGTGTACGAACAACAATATATGAGCGGGTGTTGTCGGTG
GGCGNTTCCTGTTCCCGGCCCCCCAATCCCTATTTATTCCATTTAAGAAT
ATACGCTTATAACTAGGGGGGTTAGAGGCCCCTTGTGTCGGGGTCGGGGA
CCACTTTGGTTTTCTCCGGCTCAGAAAACAATTTTTTAAGGGTTTGGAAC
ACCCTAATTAAGTAAGGTGTACCCCGCCGGGAAAATTTCCAAAAGGCAAG
GGGGGAAATTATAAGCCTGGGAACCTGGCGTTTGGTGTAAAACCAATGGC
TTTAAAAAAGAAACCATATTATTCTTTTTTGGGGGGGAAAATTTTGGCTT
GGGGGAAATTTCATTTCATGTGGGCAGGTAAATGGGCACCAAAAAAGGGT
GGTTTATTGGGGGGTGGGTACTAAGAGGAGGATTATTTGGTATTTCCCTG
GGTGTTTTAAAAAGGGGGGGAATATTAATTTTTTTTTTGGTCTCAAATGG
GGCTTAAATAAAAAAAAACTTCTTTGGGGTTGAAAAAGGAGGGGGGAAAA
AAAAAAGAATAAAATATGTGGCACTTATAAAATATTCCCTCTCTCTGCGG
GTGGGGGGGGGGGGGGCTATTTTATCGGTGGGAAAAAATGGTTTTTGTCT
TTATAGCAAAATAGAACCCTTTTCGGCGGGGTGAACCGTGACAGAAATAG
ACCGTACGTACTTCTCCTATTTATTTTTTTTTCTTCCCTATTCCCCCCAC
CACACACTCTTCCCTCTTTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_d08.b1 MSMg01no063_d08.b1 CHROMAT_FILE:
MSMg01no063_d08.b1 PHD_FILE: MSMg01no063_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:29 2005
         (228 letters)



>mm_chr7_66001447_66002075
          Length = 629

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%), Gaps = 1/225 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatttatgctaatgaatgactcatgtgctgcagagtgtcttaagggccccttgagaa 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ctttatttatgctaatgaatgactcatgtgctgcagagtgacttaagggccccttgagaa 260

                                                                       
Query: 61  tcttaactaatctgagactgggacaaatctaaacttctctagcccgtcagatt-agtaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcttaactaatctgagactgggacaaatctaaacttctctagcccgtcagattcagtaaa 320

                                                                       
Query: 120 gcaatttttagtcactcatactaaagtgtatgtgtcagaatgccttactccccactgttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatttttagtcactcatactaaagtgtatgtgtcagaatgccttactccccactgttc 380

                                                        
Query: 180 ctcacctactaaaggccaagaaatgtgggtgtcactgactgatga 224
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacctactaaaggccaagaaatgtgggtgtcactgactgatga 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 629
Length adjustment: 9
Effective length of query: 219
Effective length of database: 620
Effective search space:   135780
Effective search space used:   135780
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)