BAC Information

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BAC

Clone NameMSMg01-063E03
Chromosome7 (Build37)
Map Location 17,485,858 - 17,486,008
singlet/doubletsinglet
Overlap genenone
Upstream geneCrxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8
Downstream genePtgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E03.T7 (MSMg01no063_e03.b1)MSMg01-063E03.TJ (MSMg01no063_e03.g1)
ACCAG289040AG289041
length765820
length of high quality
(start - end)
151 (130 - 280)---
definitionCHROMAT_FILE: MSMg01no063_e03.b1 PHD_FILE: MSMg01no063_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005CHROMAT_FILE: MSMg01no063_e03.g1 PHD_FILE: MSMg01no063_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNAAAANNNNNNNNNNNNNNNNNNNNNNNNNNT
TGCCTTNTTTCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCCGA
GAGGATCCGCGGAATTCAAACTATTCCCCTCCCTCCTTGGTCTTCCTTAG
ACACTACCCCACTTCAGAGTCTGTTATTTTTGCTGATGCAGACTGGACTC
TCTGTCTCCTGAAGTGGCTCACTGGGCTTTCCTCCCCAGGAGGCCTTGCA
CGAGCCTGCTAAGTGCTCTACATTTGCATTGTATTAGGATCCCCTGGGCC
CCAACTCTGACCTTCCTGTACAACGCAGGCTGGAGCAGCTGTTTTTACAT
CTTGGTCCTGCTCCCATCTCTCAGCCCTCTCCTGTCTGACTGCTTCATGT
CTGTGATAGCCCCCCCGCCCATCTTTTTCACCGACAACCCTCCTGGATGA
TCTGGTTGGATTTCTCTTATTTTCCTATCCCCCCCGCCCTTATCACATTT
TTTCAATGCTCGGTAGATTGCTCCTCCTTCCCCGCCCCCCACTTTTCTCT
ATATCTGACTCCGATCCCCACCTTCCTTCTCCACTATCTATATACCCCCT
CTCGCTCCTTTGGGGTACTTCCTTCTAACTACAACTCCCTTTATCTTTCC
CTTCTCATTTTTTTACCCCCCCCCATATTTCCACCCCCTTACTACATCTC
CTCCCCTTCCTCTTTTTCTTCTCTCTTATTTTTTTTCCTGTCCTCCTCTT
TCCCCCTCAGATTTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCNNCCNCCC
GCGAAGATACGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTACTGATGTTTTCTTACACAAAC
CTGATAGTCTAACTGGCCTTCGCTAACATTATCTTGCTTTATACTACACA
CGAACTAATGCAAGCCTTTGGTCCCTCAACAAAACTCTTCTTTGTGTAAG
TAATGGTAATAGGTTAAACGGACCAATATTGGTATATACGCCCACCCTCT
CCTTCTCCAGACTCTTGCGGCTAGTGTGCTTAATTATCCACCTACCCCCC
TCTTCTTATGGCATACTGCTACCCTTATACCCCCACTTCAAATATCAAAT
ACTTTCGCGCAACGCGGCTGTAAAAAACACCTGATCCAAATTTGTTTTTT
NNCTCCTCCCCAGATCCGGTCCGCTTCGAGCGGGTAGCCTTTTTTTGTTT
ATTTCTTTCCCCCCACCCCTTCCAACGCACAAGACTTTACCTTACAATAG
GTTGTGACACATGTATCCATAACTAATCACCCCTTAACGAACAAACAATC
CCACTTCACCTTCCTCTAAGCCCTCGTATGTAGTTTTCCTTTTATCCGTT
AAACAAAATACTCAATTTTGACACATAACCAATCTATATCTTTTACTTTC
TCTCCAACGATACCTCTTTTTTTCCTTTATCTCCTCTTATCCCTCAACGC
CTTTTCCATTATTCTCTTCCTCCCTTTTTTTTCACTTTACTTTAGTTCTA
TTTTATTTGCCCTGATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e03.b1 MSMg01no063_e03.b1 CHROMAT_FILE:
MSMg01no063_e03.b1 PHD_FILE: MSMg01no063_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:33 2005
         (151 letters)



>mm_chr7_17485658_17486208
          Length = 551

 Score =  284 bits (147), Expect = 1e-81
 Identities = 150/151 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctccttggtcttccttagacactaccccacttcagagtctgttatttttgctgatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tccctccttggtcttccttagacactaccccacttcagagtctgttatttttgctgatgg 260

                                                                       
Query: 61  agactggactctctgtctcctgaagtggctcactgggctttcctccccaggaggccttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactggactctctgtctcctgaagtggctcactgggctttcctccccaggaggccttgc 320

                                          
Query: 121 acgagcctgctaagtgctctacatttgcatt 151
           |||||||||||||||||||||||||||||||
Sbjct: 321 acgagcctgctaagtgctctacatttgcatt 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)