BAC Information

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BAC

Clone NameMSMg01-063I22
Chromosome7 (Build37)
Map Location 58,429,131 - 58,429,293
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, 4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186
Downstream geneLOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063I22.T7 (MSMg01no063_i22.b1)MSMg01-063I22.TJ (MSMg01no063_i22.g1)
ACCAG289269AG289270
length689748
length of high quality
(start - end)
566 (42 - 607)163 (72 - 234)
definitionCHROMAT_FILE: MSMg01no063_i22.b1 PHD_FILE: MSMg01no063_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:58 2005CHROMAT_FILE: MSMg01no063_i22.g1 PHD_FILE: MSMg01no063_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGAGGAATACCGAATGGCTGAGAAACACCTGAAAAAATGTTCAA
CATCCTTTAATCATCAGGGAAATACAAATCAAAACAACCCTGAGATTCTA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGTAGAT
GCTGGCAACGATGTGGAGAAAGAGGAACACTCCTAATCACTCTGGAAATC
AGTCTGGCAGTTCCTTAGAAAATTGAACATATTACTACCAGAGGATCCTG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGGCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGTCCCTAAACAGAGGAATGGATATAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAATGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAACATCTGAGTGAG
GTAACCCAATCACAAAAGTTCTCACAAGATATGTACTCACTGATAAGTGG
ATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTTCAA
AACACATGAAACTCAAGAAGAATGGAGACCAAAGTGTGG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCTGATCCTCAACTGCTCTGAGGGCAGC
AGGTCCTCTGGAATGTATCACTATATGTTGTCTTCATGGATTCAGACCAA
CTAGAATTCTGCTTAGCAACAAGGAGCATGCAGAAGGTGTTGAAGTGAAA
GAATATGAGTGGTATTCGGGAGGGTGGGGATTTTGGCGCNNCCCCCCCCC
TTCCCCCCCCCTCCCCCCTCCTCTTCCCCCTCTCTCCCCTTTTTCCTTCC
TGTTTCTCCGCCTTCCTCCTTTTTTTTTTCCTCCCCCACCCCCCCCCTTC
CTTGTTTCGTTTTTGTTTTTCTCCCCCCCCCCCCCCTCCTTTGTTTTTTG
TTTTTTTTCGCTCCCCTTTTCTCCCCCTCCATAAAACAAAAGTCCACTTT
GGCCCGTGGGGTGCGTCTCTCTCCCCCTTCCCTCCAACTTTCCCCTCTCT
CTTTCCTCTTTTTCCCCTTTTGATCGTTCTCGTGCGTGCCTTCCTTGTGC
GTTTGTTCGCCCCTTGCTCCTCTACCCGCCCCCCCCCACTTTCCTTCCTT
CTTCTCTCCCTCTTTGTCCCTCTCTCTACTCCTCGCTGGCCTATCTCCTA
TTCTTCTCTTCCTCTCAACCCCCTTCATCCGTCCCCCTCTCATCCTTCGA
CCTCTTCTCCGCCCTGTTCTCGTTGCTCTCCCCCCGCCCTCGTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_i22.g1 MSMg01no063_i22.g1 CHROMAT_FILE:
MSMg01no063_i22.g1 PHD_FILE: MSMg01no063_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:58 2005
         (163 letters)



>mm_chr7_58428931_58429493
          Length = 563

 Score =  261 bits (135), Expect = 1e-74
 Identities = 156/163 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgatcctcaactgctctgagggcagcaggtcctctggaatgtatcactatatgttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agctgatcctcaactgctctgagggcagcaggtcctctggaatgtatcaatatatgttgt 260

                                                                       
Query: 61  cttcatggattcagaccaactagaattctgcttagcaacaaggagcatgcagaaggtgtt 120
           |||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||
Sbjct: 261 cttcatggattcagacgaaatagaattctgcttatcaacaaggagcgtgcagaaggtgtt 320

                                                      
Query: 121 gaagtgaaagaatatgagtggtattcgggagggtggggatttt 163
           |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 321 gaagtgaaggaatacgagtggtattcgggagggtggggatttt 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)