BAC Information

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BAC

Clone NameMSMg01-063K07
Chromosome7 (Build37)
Map Location 78,608,102 - 78,608,384
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063K07.T7 (MSMg01no063_k07.b1)MSMg01-063K07.TJ (MSMg01no063_k07.g1)
ACCAG289330AG289331
length7481,374
length of high quality
(start - end)
291 (104 - 394)---
definitionCHROMAT_FILE: MSMg01no063_k07.b1 PHD_FILE: MSMg01no063_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:05 2005CHROMAT_FILE: MSMg01no063_k07.g1 PHD_FILE: MSMg01no063_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCNNNCCCCCCCCTCA
TCACAACCACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTTGAGACTTTATTACTGGACATGCAAAAGCTGTC
AAGTCCTCAATTAAAAGATGAAATATTATCTCCTTTTTCCCTCTTAAATG
TCTTTGAAATCATTTCATGGACATGCAAAACAGTTGGTTGGTATTTTGGG
GAGTATTCGTGGAAGTAATTGAGCGCACTGCCTAAGAGTATTTTTTTTTG
TGCTAATTAAATATTCCAAACTTCTATCAAGATTATTGTCACCTATTTAA
TGGCTCATTGAGTTTACAATCTATGCAAGTTCTCTTTCATTGCCAGAGGT
AGAACATCCATTCCAGAAATGACAAATTACGCAGCATGCTCAAAAGATAA
AGGACCTTCAGGAGATGAACCACATTTCCAATGTTGACGGCAATGACCCA
GTCCACAGGTTGTACTTATAATCTGACCATTTCGGAATGTTTGGTTCTTC
CCCACAATTCACTTACACCTCTTTGTCATAACCTACTGGTTCTGCAGATG
GTTTAATGCAGATGGTTGTTGCGTCCTCTACTTAATCTTTGTATATAAAA
TACATACTTCCTTTCAATATCTGAAAAAAACCTTATATATTTTAAATACT
CAACTTATTTTTATGCACATTTATTCCCATATATCCCCGCTTTTACCC
NNNCCCCNNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNNNNNNNNNNNCC
CNNNCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNCCCNCCNNNCCCTACT
TTTTTTTCCGCTCTTNNTTNTCTNTCCTTTTTCTNNTCTTCTCCCCTTTT
CTTCTTTTTCCCTNCCCCTCCTTTTATTCCTCTCCTCCCCCCCTCGAACT
CCTATTATGCTTTTTCCCCTTCCCCTCGCCCTTCTCTCTCCCTTTCTTCT
TTTCCTCTGCCTGCTCCCCTCANTCTTTTTCCGCCTCTCTTCTTATTTAT
GCTTTCTTTCTTCTCCTCTCCTTCTTTCTCTTCCCCTCCTTTCCCTTTTC
CCCTAACGCCCTACCCTTCCGTCGTTAGTATATATTGCTTATACCTACGA
CATGTAACGATATATATATTACTTGTCATATAACAATTAATCCCCACTTA
ACACGTTCAAATTCTACCCCACTACCTATTTATAAGTTTACACCACATCA
TATTGGACCATATTATGAGCACTTCTATATTCACAATATATATATATATA
CATATAAGGTATCGGTTTCTCATCGCATATATATGGCTGAGATATCACTG
ATATCGCTACACCCATAATCACTAAATCTTTATCTATTTAAAATAATATT
ATTCACAACTTATCTCCCGCATATATGTAAGAAATTAACCANATCTGATA
CCCAACTTATCAGAAATGTCTTCTATTATCAGATCTTACATAGCTGTATG
ATAAGCGACATGAGATATANTAGACCGCGTGTTGTACTTGCAAGTGAGCA
GAGCGTCGAATCGTAAGAATATAATATTAATCACATATATAAGATGAGGG
CACATAATCGCTCGAGACAGCGGNTAATCATTATAGTAACCACAAATATA
TATGAATATAATAAACCACGCATGCAATCGGAGTTCATCAATCTAATCTG
TATTATGAGTTTGGCAGAGAGAAATAATAAGCAATAATAGCAGTTGAAGA
GATGAGTGAATGTGGAATAAAAGATATAGCGAACGCATGATATAGTAGGT
TGAAGCTGATTATAGCAGCAGCAATATGATATCGAGAGAACACCTGATAT
ATACGACTATCATATATATAACGTGTATAACAGAGCGAATTAATGTTATC
GCCACTACAGTATTGACCTACGCTTATCTACTCACAAGCTCTTATCNCTA
TTATATCTATGTTCGTGCATCTAACATCTCGAGATTAGGACGCGATCGAT
GATGTGAAGTAAGAGATCAGAAAGAATGGAGAGATCGACAGATGTGACGA
TGTAATATCAAACTCGACGACTATTCTTGTATCGTCCCGCCATCGTGAAT
TAGTCTCAGCATCTGTGTCCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_k07.b1 MSMg01no063_k07.b1 CHROMAT_FILE:
MSMg01no063_k07.b1 PHD_FILE: MSMg01no063_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:05 2005
         (291 letters)



>mm_chr7_78607898_78608586
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%), Gaps = 2/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttgagactttattactggacatgcaaaagctgtcaagtcctcaattaaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaattcactttgagactttattactggacatgcaaaagctgtcaagtcctcaattaaaag 428

                                                                       
Query: 65  atgaaatattatctcctttttccctcttaaatgtctttgaaatcatttcatggacatgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atgaaatattatctcctttttccctcttaaatgtctttgaaatcatttcatggacatgca 368

                                                                       
Query: 125 aaacagttggttggtattttggggagtattcgtggaagtaattgagcgcactgcctaaga 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 367 aaacagttggttggtattttggggagtattcatggaagtaattgagcgcactgcctaaga 308

                                                                       
Query: 185 gtatttttttttgtgctaattaaatattccaaacttctatcaagattattgtcacctatt 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gta-ttttttttgtgctaattaaatattccaaacttctatcaagattattgtcacctatt 249

                                                        
Query: 245 taatggctcattgagtttacaatctatgcaagttctctttcattg 289
           ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 248 taatggctcattgagtttacaatctatgcaagttctc-ttcattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)