Query= MSMg01no063_l03.b1 MSMg01no063_l03.b1 CHROMAT_FILE:
MSMg01no063_l03.b1 PHD_FILE: MSMg01no063_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:09 2005
(371 letters)
>mm_chr7_19736189_19736958
Length = 770
Score = 658 bits (340), Expect = 0.0
Identities = 358/364 (98%), Gaps = 1/364 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcctcctcccgcttctgcagctcctctggggtcatctcactcttgggtttatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcctcctcctcccgcttctgcagctcctctggggtcatctcactcttgggtttatt 389
Query: 65 gaggagactcctggatagagaacccaggggtgagatgggttcaagttggaaatgtacgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaggagactcctggatagagaacccaggggtgagatgggttcaagttggaaatgtacgtg 329
Query: 125 atcaaagccacactgtccagtgtctccccagccccctttctggtgcagtctttactggag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 atcaaagccacactgtccagtgtctccccagccccctttctggtgcagtcttttctggag 269
Query: 185 gcaggagagacatttccaatggtagcctgctctggctcatctacctaacctcttccaccc 244
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 268 gcaggagagacatttcca-tggtagcctgccccggctcatctacctaacctcttccaccc 210
Query: 245 accgctgaccttgaattctcaattctcctgactccactgcctaaggtctgagatgacaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 accgctgaccttgaattctcaattctcctgactccactgcctaaggtctgagatgacaga 150
Query: 305 ggctcaccgtcatgcctggcagctgattcttctttcaaaccttactctatccttatatct 364
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggctcaccatcatgcctggcagttgattcttctttcaaaccttactctatccttatatct 90
Query: 365 tgtc 368
||||
Sbjct: 89 tgtc 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space: 275482
Effective search space used: 275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_l03.g1 MSMg01no063_l03.g1 CHROMAT_FILE:
MSMg01no063_l03.g1 PHD_FILE: MSMg01no063_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:09 2005
(284 letters)
>mm_chr7_19567283_19567966
Length = 684
Score = 395 bits (204), Expect = e-114
Identities = 254/284 (89%), Gaps = 26/284 (9%)
Strand = Plus / Plus
Query: 1 ttgatatgtgccaccaaatctggcttaatcacacttttttttaaccccaaaatctcactt 60
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 225 ttgatatgtgccaccaaatctggcttaatcacacttttt--------caaaat------- 269
Query: 61 atttatttatttatttattt-atttatttatttatttatttatttaggcatggggcacat 119
|||| | | || | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 270 -ttta---a---a---atctcatttatttatttatttatttatttaggcatgaggcacat 319
Query: 120 gcaagtgtgctgtagaggtctgaggtcaaatttcaggagttggatctcttattccatcct 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 320 gcaagtgtgctgtagaggtctgaggtcaaatttcaggagttggttctcttatttcatcct 379
Query: 180 gtggaagaaccatatagctggatatagtggtatacagctgtagtctaggagcttgagaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtggaagaaccatatagctggatatagtggtatacagctgtagtctaggagcttgagaga 439
Query: 240 tggaggcaggcagggggatcaccaattaatgcctattaattata 283
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggaggcaggcagggggatcaccaattaatgcctattaattata 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
