Query= MSMg01no064_a05.b1 MSMg01no064_a05.b1 CHROMAT_FILE:
MSMg01no064_a05.b1 PHD_FILE: MSMg01no064_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:36 2005
(769 letters)
>mm_chr7_79016986_79018155
Length = 1170
Score = 1408 bits (728), Expect = 0.0
Identities = 759/773 (98%), Gaps = 7/773 (0%)
Strand = Plus / Plus
Query: 1 ctgttgtctagtgtgagggaatgttcagagaaaaattattagatgttagggatccgagtg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctgttgtctagtgtgagggaatgttcagagaaaaattagtagatgttagggatccgagtg 260
Query: 61 agtctgagtttgttccctgagaacagaacagagcccagtgtctttgaaagaaacacaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctgagtttgttccctgagaacagaacagagcccagtgtctttgaaagaaacacaggc 320
Query: 121 aagtggacgtatgtggcctcacgcttgcagcttacgtttggggaaagctggatgatgtgg 180
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 321 aagtggacgtatgtggcctcacgcttgcagcttacatttggggaaagctg---gatgtgg 377
Query: 181 aagtgggcgggggacagccaggaggacttggaacaactttaacttcctcatcaaagattt 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagtgggcaggggacagccaggaggacttggaacaactttaacttcctcatcaaagattt 437
Query: 241 tggttactcagagagcattttcttgggttaacggtgggcagtggagatggtggtatgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggttactcagagagcattttcttgggttaacggtgggcagtggagatggtggtatgtct 497
Query: 301 tcatgcatctcacaacgttgcagcttttggtgcaacttggcaaggagcagaaaggctggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcatgcatctcacaacgttgcagcttttggtgcaacttggcaaggagcagaaaggctggg 557
Query: 361 aactcatatcttgtgtcggagggcattaaacactggtctgagcagaggc----tcctgct 416
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 558 aactcatatcttgtgtcggagggcattaaacactggtctgagcagaggctccttcctgct 617
Query: 417 cctttaatcagatttgtgtaaatatttggaagaaaatgagaaccagcgccatttgagaaa 476
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cctttagtcagatttgtgtaaatatttggaagaaaatgagaaccagcgccatttgagaaa 677
Query: 477 gctccccgattgcctcagtttctacgactgctaaacaatagccccatattccaggatcgc 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctccccgcttgcctcagtttctacgactgctaaacaatagccccatattccaggatcgc 737
Query: 537 gacgacaaaatggaacgttagaagtgaaaactataacaacatcatccaagaggccttctg 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 738 gacgacaaaatggaacgttagaagtgaaaactgtaacaacatcatccaagaggccttctg 797
Query: 597 ccgtgcgtgtcaataaacacagagaagattccaagttttaagaanaggaaagaaaacagc 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 798 ccgtgcgtgtcaataaacacagagaagattccaagttttaagaaaaggaaagaaaacagc 857
Query: 657 ctagatgtctattagggactggataataacgagcaggaaataagggctctgtgtccaatt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ctagatgtctattagggactggataataacgagcaggaaataagggctctgtgtccaatt 917
Query: 717 acaccacacagcaggatggagtacatttcaagatgataagctacttttcattt 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 acaccacacagcaggatggagtacatttcaagatgataagctacttttcattt 970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1170
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1160
Effective search space: 880440
Effective search space used: 880440
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no064_a05.g1 MSMg01no064_a05.g1 CHROMAT_FILE:
MSMg01no064_a05.g1 PHD_FILE: MSMg01no064_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:36 2005
(385 letters)
>mm_chr7_79023572_79024356
Length = 785
Score = 714 bits (369), Expect = 0.0
Identities = 381/385 (98%)
Strand = Plus / Minus
Query: 1 aattcattgtataaattactgcttccccgacactgatgagattattggtgagatttggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aattcattgtataaattactgcttccccgacactgatgagattattggtgagatttggat 526
Query: 61 gaaacggatgacaagctaaaatttatttctgaggtcatgcctgaaggtctaggtagccat 120
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 525 gaaacggatgacaagctaaaatttgtttctgaggttatgcctgaaggtctaggtagccat 466
Query: 121 agaacacagagtatcacttactcatgtatgcaaacacatgttttcaaaaccatgtatatt 180
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 465 agaacacagagtatcacttattcatgtatgccaacacatgttttcaaaaccatgtatatt 406
Query: 181 tgaaataagcctaaatgctagtgacataagtaaaaaaaaaagtctagaaaatgagatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgaaataagcctaaatgctagtgacataagtaaaaaaaaaagtctagaaaatgagatttg 346
Query: 241 attcacagcagtcaacctcttccttctgaatattaactattaattcaaataaatacacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 attcacagcagtcaacctcttccttctgaatattaactattaattcaaataaatacacaa 286
Query: 301 acttataattttcaaagtaattattttttcaaagtaaattttacctcctgagtaaatgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acttataattttcaaagtaattattttttcaaagtaaattttacctcctgagtaaatgtc 226
Query: 361 aaactattttagaatttaaagcaat 385
|||||||||||||||||||||||||
Sbjct: 225 aaactattttagaatttaaagcaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
