BAC Information

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BAC

Clone NameMSMg01-064L16
Chromosome7 (Build37)
Map Location 117,974,718 - 117,975,026
singlet/doubletsinglet
Overlap geneRnf141
Upstream geneScube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3
Downstream geneXlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L16.T7 (MSMg01no064_l16.b1)MSMg01-064L16.TJ (MSMg01no064_l16.g1)
ACCAG290119AG290120
length734721
length of high quality
(start - end)
313 (45 - 357)---
definitionCHROMAT_FILE: MSMg01no064_l16.b1 PHD_FILE: MSMg01no064_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005CHROMAT_FILE: MSMg01no064_l16.g1 PHD_FILE: MSMg01no064_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTGCCTCTTATAAATTCCAGTCGCTCTTGGTTTCATAGCTAACG
TAACAGTATTAAGAGTAGAATGTCTATTCAGCCTCTAGCTCCTCCTCTGT
GGCTCCCGGGGCAGGAGCTGTTCCTTGCAGTTCTGTGTCATGGCTGAAAT
ACTGTGCTTTGCATCCAGCAGCTTGTTCTGGATGATAAAACCTGTTGAAG
AGGCGCCATCCTTTGCATGGCCAGGGCTAAGCCTTTCCTAAATTGTATTT
ACTCTCCATTATTTCATAAAATACTCAGTTTACAAGGAAGAGACCTTGGG
GATTACTTTTTTATCACCCCCCCGACCCTTTGGTTTCCTGCCGCCCCTTT
CATGACAAAGCCAACGTTTGAAATTATTAATTAAATTCTTTTTGCCCCAA
GCTTTCACTATGTTACTGTATTGTTTAGTTTAAATTGCTGTACTTTATTA
AAACACTTTCTAAAAATAAGATTCTAAGTAGAAAAAATATAAATGTTAAA
GACAAGGCCATTAGAGTCTTTATTTGCACTTTGTTTTGTTTTGTTTTAGG
GAGGAAGCTGATCTATTCCAAGAATTTTTTTATTTATATTTCTTTGCAAA
GGATCTTCCAAAGCCAATACTTGGCTGAGAAAAAAGTGAAGTCTGATATG
GAAAAATGACTCGAGACTAAAAGCGCCATGTCTC
NTTTCGATGATAGTGGTAGCCTGGGGGGCGGCCGGGCCGCCAAATTTAGG
GGAACAATAAAAGAATCCGGGAAATCCTTGGACTTGGTAAGGTTCCCCGA
ATCCTGGAAAGAATTGGTTGGGAAAGGGGGGGGGGGAACTTTCCAAAGGA
GGGGAAGGTGGTTAAAAGACCTTAAAGGGGTGGAACACTGGCCCCCAAGA
AGGAACAAAAGGTCCAAATTAAAATCCCGGCCATTGGTCCAATTCCCATC
CCCCGGTTTTAAGGGTCCCAAAATCCAAAAACGAAAAAAGAAGTTTTTTT
TTTTTAAACTAATGGCTTTAAGAATCCCCTGGGCAATCCTTTTTTTCCTC
CTGGTGGCCGCTTTTTTTTTTTTTCCCCCCCCCCACGGCCTAAGGGCAAG
GGAGGAATTTAAAAGGGGCCCCCCCAAAAAAAAAAAAAACCCCCTGGGAA
CCCCCCAAACCAGGGATCCACCGGAAACCAAAAACCCCCCTTCCTCCATT
TTTTTTTTTGAAAACGGAAGGCCTAATTTGGAACCGGGGGTATGAAGAAC
CAAGGCACTTCCGGAAAAAAGGGTTTGGTTGAACTTAATACCCTCGGAAC
GGTTAATCTAAGCCCTAAGGCCCGGCCAGACCCCCAAGCGAACGGAAATC
CAAAAAACCCCCTTAAATCCCCTTTCCCTCCCTCCCCTTCGGAAGGAGCG
CGCCGACCCCCGTTTTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l16.b1 MSMg01no064_l16.b1 CHROMAT_FILE:
MSMg01no064_l16.b1 PHD_FILE: MSMg01no064_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:53 2005
         (313 letters)



>mm_chr7_117974515_117975227
          Length = 713

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcttgcctcttataaattccagtcgctcttggtttcatagctaacgtaacagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattctcttgcctcttataaattccagtcgctcttggtttcatagctaacgtaacagt 453

                                                                       
Query: 64  attaagagtagaatgtctattcagcctctagctcctcctctgtggctcccggggcaggag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 attaagagtagaatgtctattcagcctctagctcctcctctgtggctcccggggcaggag 393

                                                                       
Query: 124 ctgttccttgcagttctgtgtcatggctgaaatactgtgctttgcatccagcagcttgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgttccttgcagttctgtgtcatggctgaaatactgtgctttgcatccagcagcttgtt 333

                                                                       
Query: 184 ctggatgataaaacctgttgaagaggcgccatcctttgcatggccagggctaagcctttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctggatgataaaacctgttgaagaggcgccatcctttgcatggccagggctaagcctttc 273

                                                                       
Query: 244 ctaaattgtatttactctccattatttcataaaatactcagtttacaaggaagagacctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctaaattgtatttactctccattatttcataaaatactcagtttacaaggaagagacctt 213

                    
Query: 304 ggggattac 312
           |||||||||
Sbjct: 212 ggggattac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)