BAC Information

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BAC

Clone NameMSMg01-065D08
Chromosome7 (Build37)
Map Location 66,440,930 - 66,441,397
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818
Downstream geneUbe3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065D08.T7 (MSMg01no065_d08.b1)MSMg01-065D08.TJ (MSMg01no065_d08.g1)
ACCAG290473AG290474
length693686
length of high quality
(start - end)
551 (42 - 592)566 (69 - 634)
definitionCHROMAT_FILE: MSMg01no065_d08.b1 PHD_FILE: MSMg01no065_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:39 2005CHROMAT_FILE: MSMg01no065_d08.g1 PHD_FILE: MSMg01no065_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTTTTTTTCTTTTTTAATTTTTTTAATTTTCTTTTTTTTCCATTTTT
TATTAGGTATTTAGCTCATTTACATTGCCAATGCTATACCAAAAGTCCCC
CATACCCACCCACCCCCACTCCCCTACCAACCCACTCCCCCTTTTTGGCC
CTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCC
TCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCT
AGAGTCAAGAGCTCCGTGGTACTGGTTAGTACATAATGTTGTTCCACCTA
TAGGGTTGTAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCC
TACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACA
AAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCAC
TTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACC
AGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAA
AATAAACTCAAACAAGTCAATGGTCTTTCTCTATACAAAGAATAAACAGG
CTGAAAAAGAAATTAGGGAAACTACACCCTTCTTCAAAGTCAC
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTAGCACCAGAAGCATTCACAAACTGCAGTC
TGAGAATAGTCATGATTGCCACATAATAGGCAGATTGGAGTGAAAATGTT
CCTGTGAGAGCTCTTGAACTGGTGACTGTTTGATCAGGAAACTTGGGAGC
TAAGTCTGAAGATGAGAATATGTGGCAATTTAATCTTAACTTATCAAAGG
CAGATGCTGACTCAGTGTGAGGTTAACAGTACTAGAAACAGAAAGGAGAT
ACATTTATTAGTAAATGATATCTTTTGGAAGGCCAGGCCCTCAGGAAGCA
GACACAAATAGTTTAAGGCTAACCTTGTCTATGTAGTGACTTCTGGGACA
TCCAGGGCTATACAAATAAATAAAACAAAAAGCAATAATGTTTTACAACC
AGTAGGATTCAGTTCAAATTTTGGAAGAGGGTTTACTTAGTATTGTGATC
TTAGTAAACCATTACAATGCAGCTGGAGGTTGCTATGATCTCAAGGAAGG
ATAGTGGCAGGTGTGATGACTGCCACATTACTGCCAATCCCTATGGGGAT
TTAGGAGAGGCAGGCTATATTAGTCAGGGTTCTTTAGAGTAGCCAAACTA
ATGGCCTTGAACATCATTAGGGTGAAACAGTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_d08.g1 MSMg01no065_d08.g1 CHROMAT_FILE:
MSMg01no065_d08.g1 PHD_FILE: MSMg01no065_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:39 2005
         (566 letters)



>mm_chr7_66440930_66441895
          Length = 966

 Score =  835 bits (432), Expect = 0.0
 Identities = 456/468 (97%), Gaps = 7/468 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagcaccagaagcattcacaaactgcagtctgagaatagtcatgattgccacataata 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 468 actagcaccagaagcattcacaaactgcagtctgagaataatcatgattgccacataata 409

                                                                       
Query: 61  ggcagattggagtgaaaatgttcctgtgagagctcttgaactggtgactgtttgatcagg 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggcagaatggagtgaaaatgttcctgtgagagctcttgaactggtgactgtttgatcagg 349

                                                                       
Query: 121 aaacttgggagctaagtctgaagatgagaatatgtggcaatttaatcttaacttatcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaacttgggagctaagtctgaagatgagaatatgtggcaatttaatcttaacttatcaaa 289

                                                                       
Query: 181 ggcagatgctgactcagtgtgaggttaacagtactagaaacagaaaggagatacatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggcagatgctgactcagtgtgaggttaacagtactagaaacagaaaggagatacatttat 229

                                                                       
Query: 241 tagtaaatgatatcttttggaaggccaggccctcaggaagcagacacaaat-------ag 293
           |||||||||||||||||||||| ||||||||||||||||||||||||||||       ||
Sbjct: 228 tagtaaatgatatcttttggaaagccaggccctcaggaagcagacacaaatagatctgag 169

                                                                       
Query: 294 tttaaggctaaccttgtctatgtagtgacttctgggacatccagggctatacaaataaat 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tttaaggctaaccttgtctatgtagtgacttctgggacatccagggctatacaaataaat 109

                                                                       
Query: 354 aaaacaaaaagcaataatgttttacaaccagtaggattcagttcaaattttggaagaggg 413
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 108 aaaacaaaaagcaataatgttttacaaccagttggattcagttcaaattttggaagagtg 49

                                                           
Query: 414 tttacttagtattgtgatcttagtaaaccattacaatgcagctggagg 461
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  tttacttagtattgtgatcttagtaaaccattacaatgcagctggagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)