BAC Information

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BAC

Clone NameMSMg01-065H01
Chromosome7 (Build37)
Map Location 79,915,006 - 79,915,301
singlet/doubletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
Downstream geneLOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H01.T7 (MSMg01no065_h01.b1)MSMg01-065H01.TJ (MSMg01no065_h01.g1)
ACCAG290650AG290651
length742773
length of high quality
(start - end)
302 (102 - 403)191 (147 - 337)
definitionCHROMAT_FILE: MSMg01no065_h01.b1 PHD_FILE: MSMg01no065_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:57 2005CHROMAT_FILE: MSMg01no065_h01.g1 PHD_FILE: MSMg01no065_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNTTNGT
AGAGGGACACATCTATAATTGCGGCGCTAATACGACTACTATTCGNAAGG
ACCGCGGAATTCCATGTAAAACTGTAGAGTCTGCATCTGTCTTTGGAAAT
TCTATGTAAACATTTTGGTATAGTAATTTCAGATTTACAGAAAGTTATAG
GTATAGAACAGTTCATTTTTCTTTTCTGGTTTTCCTGGTGTTAATATGTT
ACATGCCAGAGTAGTAGGGACAGGAGTGCCCCAAGAGGCCTTAGGTGGTG
CATGGGACAGAGGTTCACAGGTTCAAAGCTGTTTGAGAAATTTAAAGAAC
TGAAGACAAATCATGAGTTGTAGGACTGTTACATGGAGCTAAGAACATCA
TAAAGAAACCCAGAGCATCAAAGTCCTTGTTCAGGAGGAAGTTATCTCTA
GGCAATCTAGTCTTGGGTACCTGACCGCAATGATGCGTAGCCTTTAGTCA
ATGAATTCAACTACTATGATTAAAAAGTGACTTTATTTTAAATGGTTGGC
ATATTTTATTAGGTATACCATAACTTATTACATTTAATTTCATTAATTAT
TCGAATATTATAATTTTTATATGCTTACTTTCTTATTTTTAATTATAAAA
TTAATCTATATTTTTAGATTTTTATTATAAATAATTATTGATAAGGACCG
CCTTGAATTATAATTCTCTCCTACTTTTTGTATTCCCCCTGA
TTTTTTNTTTTTTNTTTNTNTTTTTTTTTTTTTTTTTTTTTNNNTNNNNN
NNNNTTTTGGTGTATATCTTCTATGNXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTA
AAGAGATAGGGATATTGAAGATAGCCCCAACTGAAATTAAAATGAAATTG
GAAAAGTCAATAAATAACCCAACTAGAAAATGTAGGGAAAACCGTACAAG
CAGAATAAATCAAGTGGAAGATAGAATGTTGGAACTTAAAGATAAAGTAG
AGGAATTAGACAGATCAAGCAAAGAATATGGAAAAACGTTAAAACACACA
GACATACACACAGACACAGACAGATACACACAGAGAGAGGGGTGTGGGCA
TGAAAGGAATGCGCAGAAAATATGGGATGTAATGCCAAGTCCAAATATTT
AATTATATGCCTAGAAGGAGAATAATTCAATATCAGTGGCACACCCCAGA
CCTTCAACATAATCATAAAAGAAAACTTCCCTAAATTAACAAAAGTCACT
CTCACACTGGTACTGCTAGTGATAACAGAATTAATGAGCATATTTAAATA
GTCTGTTTCACAATAGACAGCTACTATCTGGGATCCTTTCAGCAAAAATC
TTTGCTAGTGTATGCATTGGTTGTCAATCGTTTGTAATGCTGGATCTGGC
AATGGAATCTCTGGGAATTGGCAACTCTAAATTATGGTACCCATCCTTTT
CTTACTCCTTTTCTATATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h01.b1 MSMg01no065_h01.b1 CHROMAT_FILE:
MSMg01no065_h01.b1 PHD_FILE: MSMg01no065_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:57 2005
         (302 letters)



>mm_chr7_79914801_79915504
          Length = 704

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%), Gaps = 2/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccatgt-aaaactgtagagtctgcatctgtctttggaa-attctatgtaaacatt 63
           ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gaattccatgtaaaaattgtagagtctgcatctgtctttggaatattctatgtaaacatt 442

                                                                       
Query: 64  ttggtatagtaatttcagatttacagaaagttataggtatagaacagttcatttttcttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtatagtaatttcagatttacagaaagttataggtatagaacagttcatttttcttt 382

                                                                       
Query: 124 tctggttttcctggtgttaatatgttacatgccagagtagtagggacaggagtgccccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggttttcctggtgttaatatgttacatgccagagtagtagggacaggagtgccccaa 322

                                                                       
Query: 184 gaggccttaggtggtgcatgggacagaggttcacaggttcaaagctgtttgagaaattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggccttaggtggtgcatgggacagaggttcacaggttcaaagctgtttgagaaattta 262

                                                                   
Query: 244 aagaactgaagacaaatcatgagttgtaggactgttacatggagctaagaacatca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaactgaagacaaatcatgagttgtaggactgttacatggagctaagaacatca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 704
Length adjustment: 9
Effective length of query: 293
Effective length of database: 695
Effective search space:   203635
Effective search space used:   203635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)