BAC Information

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BAC

Clone NameMSMg01-065H13
Chromosome7 (Build37)
Map Location 112,633,263 - 112,633,660
singlet/doubletsinglet
Overlap genenone
Upstream geneAI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp
Downstream geneSmpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H13.T7 (MSMg01no065_h13.b1)MSMg01-065H13.TJ (MSMg01no065_h13.g1)
ACCAG290674AG290675
length650909
length of high quality
(start - end)		541 (21 - 561)---
definitionCHROMAT_FILE: MSMg01no065_h13.b1 PHD_FILE: MSMg01no065_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:59 2005CHROMAT_FILE: MSMg01no065_h13.g1 PHD_FILE: MSMg01no065_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATTCCCAGAGATCCGCGGAATTCACTATGTACACCAGACCTTGA
ACTCCAGAGACCTGTTGCTTGTAATTTTAAAAGCACGCTACGGCTACTGC
CTTTGCCTGGGAGCTGCTGCCCGGGCTCTGGCCCCTCCTGGCTCCCCTTT
TTTCCATCCAATCAGCACCACCAGCCCTGACCAGACTTTTCTTTCCTACC
TAACCTTTGCGTTTTATTATTTTAGAACTTGCTAGCTAGGCACAATTGCT
GGGCGCAGATTTCTCCTGCCTGGAAAGGTATGCCCTTTCCAACTTATATC
TCCATTTCTTCTCCTACCCTGAACTTAGTTGCTTGTACCCCACTAACCTC
CTTGGCCATCTGCCTGTAGAGAAGGCCACCGGCCCTAGCTCTCCCTGAGG
CCTTCATGATTGCAGAGTCCTCTTACCTCCAAAGCATAGCTAAAAAAGCC
CCTCTCCTTCCTTGTGTCTGCCTTTTCCTCCTGGGACCTGGAAGTCCCAC
TTGTACCTTCTGCCCAGCAATTGGGCCCTGGTCTTCTTTATTGACAAATG
AAGAAGCAATTAGGATACTAGAGATTAGAATCAGAACCTCCCGTTACAAA
GACCCGCCTGCTTCTACCACAATCCTTTTTAAAAGTAAATCACAGATATG


CCCCCCGCCCCNCCACCNCNTCTACTCTCCTGGCCCCCAGGGCGCCCCCN
CCCACCCCNNNNCNCCCTCTTATTTTTNTCCATTTTCTTCCNNNNNNNCC
CCCCCCCCCCTCCCTTCCCCCCCCCCTCNCCCCCTNNNNNNNNTTTTTTC
ANNACCCCCCCCCCCCCCCCCTNTCTAACTTCCTNNCTACCCCCTTCANN
AGGCCTCNTCCTCTCCCCTTACCCTTACTTTCTCTTCCTTCCTTCCCCTN
CCCTCCTCTACCCCCTTCTCCCCCTTCCCCNTCCTTCTCNACCNCCCCAG
GGCCCCCTCCCCNCCCCCCCTTTTTNCCTCTTCCNNNNNGGGNNNNGGGG
GGGGGTGCCCTCCCCCCTCATTNNNNNNNNNNNAAAAGGANANAAAAATT
TATATGCCGCTGGCGTTCCNTCCTTCCTNTNTAGGTNNCTTCTCCCTCCC
CCCCNAATAGTGTTCCCCCAACCTGGGCGTCGCCTTAAAGGCCCCCCTGG
TTTCCGGGCNCCCCGTCCGCCTGTGCTACCTGCCCACACAAAACCAATTT
TTTTAGGGCTGGCAACCCCCTTACTCAANAATTGGCCCCCCCCGACCGAG
GATATTTCCTTTTTTACAAAATTGGGAAACCCTTTTAAAATTGGAAGAAC
CCCATTCCCCCTGGGGTTAGGGGGAAAACTTATCTTAATTAAAGCCCCCT
CTTCACGAGTGTTTTTTCTTTCCCCAAACAAAACCCCGGAACCCTTCTTT
TTAAAATTTTAAAGGGCGCTTGCCCTCCCCTCTTACAAAAACGAACCCCT
TTTTTAAAGCCGCCCCGCCCGCCGCGCGTTGCCCTACCTTGTACACCCCG
CCCCGCGCGGACCCCTTTATATAATAGGGGCCTCCCGATGCGCTGGAAAA
AGTCATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h13.b1 MSMg01no065_h13.b1 CHROMAT_FILE:
MSMg01no065_h13.b1 PHD_FILE: MSMg01no065_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:59 2005
         (541 letters)



>mm_chr7_112633263_112634205
          Length = 943

 Score =  708 bits (366), Expect = 0.0
 Identities = 390/398 (97%), Gaps = 2/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcactatgtacaccagaccttgaactc-cagagacctgttgcttgtaattttaaa 61
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 398 ggaattcactatgtagaccagaccttgaactcacagagacctgttgcttgtaattttaaa 339

                                                                       
Query: 62  agcacgctacggctactgcctttgcctgggagctgctgcccgggctctggcccctcctgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agcacgctacggctactgcctttgcctgggagctgctgcccgggctctggcccctcctgg 279

                                                                       
Query: 122 ctcccc-ttttttccatccaatcagcaccaccagccctgaccagacttttctttcctacc 180
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 278 ctcccctttttttccatccaatcagtaccaccagccctgaccagacttttctttcctacc 219

                                                                       
Query: 181 taacctttgcgttttattattttagaacttgctagctaggcacaattgctgggcgcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 218 taacctttgcgttttattattttagaacttgctagctaggcacaattgctgggtgcagat 159

                                                                       
Query: 241 ttctcctgcctggaaaggtatgccctttccaacttatatctccatttcttctcctaccct 300
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttctcctgcctggaaaggcatgtcctttccaacttatatctccatttcttctcctaccct 99

                                                                       
Query: 301 gaacttagttgcttgtaccccactaacctccttggccatctgcctgtagagaaggccacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  gaacttagttgcttgtaccccactaacctccttggccatctgcctgtagagaaggccacc 39

                                                 
Query: 361 ggccctagctctccctgaggccttcatgattgcagagt 398
           ||||||||||||||| ||||||||||||||||||||||
Sbjct: 38  ggccctagctctcccagaggccttcatgattgcagagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space:   495423
Effective search space used:   495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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