BAC Information

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BAC

Clone NameMSMg01-065P02
Chromosome7 (Build37)
Map Location 113,843,689 - 113,844,089
singlet/doubletsinglet
Overlap genenone
Upstream geneDnhd1, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694
Downstream geneOlfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P02.T7 (MSMg01no065_p02.b1)MSMg01-065P02.TJ (MSMg01no065_p02.g1)
ACCAG291033AG291034
length696700
length of high quality
(start - end)
523 (40 - 562)548 (74 - 621)
definitionCHROMAT_FILE: MSMg01no065_p02.b1 PHD_FILE: MSMg01no065_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:35 2005CHROMAT_FILE: MSMg01no065_p02.g1 PHD_FILE: MSMg01no065_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGGATCCGCGGAATTC
TTTTTTTTTCTTTTTTTTTTTTTAGAATTTTCTTCATTTACATTTCAAAT
GTTATCCCCTTCCTAGTATTCCCTCTGAAAATCCCCTCTCCTATCCCCAC
CCCTGTTCCACAACTCATCCATTACTGCTTCCTAGCCCAGGCATTCCCCT
ATATGGAACCTTCACAGGACCAAGAAACTCTCCTCCCATTGATGACCAAC
TAGGCCATCCTCTGCTACATATGCAGCTAGAACCACGAGTCTCCTGTGTT
TTCTTTGATTGGTGGTTTAGTCCCAGGATTTCTGGGTTACTGGTTCATTC
ATATTGTTGTTCCTCATAGTGGGCTGTAAACTTCTTCAGCTCCTTGGGTA
CTTTCTCCAGCTCATTCATTGGGGACCCTGTGTTCCATCCAATGGATGGC
TGTGAGCATACACTTCTGTATTTGTCAGGCACTGGCAGAGCCTCTTAGGA
GACAGGTATTTCAGGCTCCTGTCAGCAAGCTCTTATTGGCATCTGCCATA
GTGTCTGGGTTTGGTGGTTGTTTATGGGATGGATCCCCAGGGGGGGCAGT
TTCTGGATGCTCATTCCTTCAGTCTCTACTCTGAACTTTGTATCTGGAAC
TCCTTCCATGGGAATTTTGGTCCCCATTCTAAGGAGGATTGAAGTA
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTCTGGGTTTTGCAGGTGTGAGTGG
GAAGCCAGAGACCTAGGTCTTCTCTGGGCCCTGGTGGAAGCTGTAAGGAA
CCCATGCCTCTGGTTAGGTGGGGGTTTGTGTTTCCCTGGTTCCTGTGGAG
GCCCCAATTACACCAGGTGTTATAAAAGATGTGACCTCAACTGTGATCTT
GAGTATATCAGAGCTCCGATGATTCTAACCACCTAAACACCAAACAACCC
AATCAAAGACTGGGTTATAGAGGTAAACTGAGAATTCACAACTGAGGAAT
CTTGAATGGTTGAGAAGCACCTAAAGAAATGTTTAGAATCCTTAGTGATC
AGAGAAATCCATATCAAAATGACCCTGAGATTCCACCTACACCAATCAGA
ATGGCTAAGATCAAAACCTCTAGTGACAACACATGTTGGAGAGGATGTGG
AGAAAGAGGAAGACTCTTCCATTGTTGGAGGGATTGCAAAGTGGTACAAC
CACTCTGGAGGTTCATCAGAAAATTAGAAATAGATCTACTGGAAGACCCA
GCAATAACAATCTTGTGAATATACCCAAAATTTGTCCCACCATACCACAG
GGGCACATGTTCCACTATATTCATTGTGCTCTTATTTGTGGGAGCCAGAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p02.g1 MSMg01no065_p02.g1 CHROMAT_FILE:
MSMg01no065_p02.g1 PHD_FILE: MSMg01no065_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:35 2005
         (548 letters)



>mm_chr7_113843689_113844636
          Length = 948

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctgggttttgcaggtgtgagtgggaagccagagacctaggtcttctctgggccctg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 401 ttctctgggttttgcaggtgtgagtgggaagccagaaacctaggtcttctctgggccctg 342

                                                                       
Query: 61  gtggaagctgtaaggaacccatgcctctggttaggtgggggtttgtgtttccctggttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtggaagctgtaaggaacccatgcctctggttaggtgggggtttgtgtttccctggttcc 282

                                                                       
Query: 121 tgtggaggccccaattacaccaggtgttataaaagatgtgacctcaactgtgatcttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtggaggccccaattacaccaggtgttataaaagatgtgacctcaactgtgatcttgag 222

                                                                       
Query: 181 tatatcagagctccgatgattctaaccacctaaacaccaaacaacccaatcaaagactgg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tatgtcagagctccgatgattctaaccacctaaacaccaaacaacccaatcaaagactgg 162

                                                                       
Query: 241 gttatagaggtaaactgagaattcacaactgaggaatcttgaatggttgagaagcaccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gttatagaggtaaactgagaattcacaactgaggaatcttgaatggttgagaagcaccta 102

                                                                       
Query: 301 aagaaatgtttagaatccttagtgatcagagaaatccatatcaaaatgaccctgagattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aagaaatgtttagaatccttagtgatcagagaaatccatatcaaaatgaccctgagattc 42

                                                    
Query: 361 cacctacaccaatcagaatggctaagatcaaaacctctagt 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  cacctacaccaatcagaatggctaagatcaaaacctctagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)