BAC Information

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BAC

Clone NameMSMg01-066G04
Chromosome7 (Build37)
Map Location 105,763,566 - 105,763,728
singlet/doubletsinglet
Overlap gene2210018M11Rik
Upstream geneRsf1, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik
Downstream geneLOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066G04.T7 (MSMg01no066_g04.b1)MSMg01-066G04.TJ (MSMg01no066_g04.g1)
ACCAG291370AG291371
length734765
length of high quality
(start - end)
166 (40 - 205)66 (75 - 140)
definitionCHROMAT_FILE: MSMg01no066_g04.b1 PHD_FILE: MSMg01no066_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:10 2005CHROMAT_FILE: MSMg01no066_g04.g1 PHD_FILE: MSMg01no066_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCT
GTTCCTGCCTATGGTTAGTAGATAAGCATTGATTTAGGCTGGAAAAAAGA
GAAATATTTGAGTTTAAAATAAAATTTATAGATGGGGATTTGTTACTTAA
AGTTTGTTGTTTATTTTTTATTTTCCCATTTTAGGTTCTGATGGCCATTG
TTAAGAGGTTACAGGTAGACACACTTAGGCTTTGTGTCTCACTTTGTAGT
TTGGCTATGGGTGACTTATCTAACCAGTGCAATATTTTATTTCTTCATGC
CTACTTTGGCTGATGATAGGCGTTTTGAAAGTGCCTAAAGTAGCGTCTAA
CACATGTATAAGCTCTCAGTCTTTGATCCCCTACTGTTCTTGGTATTTAA
GTACTCTGATTCACCATCATCCTTACCTTTCTTGATCTCCCTTTAATACT
GACTTAAGCCTATGTTCCATAGCCCCTTATATTGTTGAAAGTGTTCTATA
TTATGTCTTTTCTGAATTCTTTTTACCCCATTTTTTTTATTTCCTTCCAC
CCTGTATTTCCTTGCCCTTATTACACGTATGTTCTCCTGTTCCGTTTACC
TCTCTTATTCTTTCGTTGTCCCTCTTTTTTATCATTCCCTTTCACTTTTT
TTTTTTTACCCTGTCATTTGCCTCTTATATTCGCCCCCCCATTACTTTTT
ACCCGCCACACCTTTTTTCCTCTCCCTTTATTTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTGTAAAATCAAACTCATCTCCG
GGGGCCACCTCTGCTCTTGGGGCCACCTTTGCTTTGGAGGGGGAGGGCAA
ACTGCCCCGCTGTATCTCCACTTCTCCATCTGTATCATGGGCTCAATCAT
AAACATGCTTATTCGTAATGCGCGAATGCTTGAACATACTCGAGGCCCTG
GGCGCTGGCTCTGTGAGAACCCTGGGGACTGTTAATAAAAAAAAAAAACC
TCTGCTGTCGGTAGGGGCAGATTCTTGCTGGTGCACAGGCTTATCAAGCT
GTCCATAGTGAGTTAGTTCTTATGCTCTGAGAGTTTGCTTTCCCTCATGT
TCTATATCCATAGCCCGTACCTTCATGGTCGCTCTGTTAACGGCTTCTTG
ACCTGTTCTACTGTGTTCATCCATGTTGTTCCACTCGCATCCGTACATTT
TCCATGCGTTATACCTCTCCCCCGGCCTGATTTGTAAAATCATTATGTAC
TTTTCTTTCCGTGTATTCTCCCCTGTCCCTTTCTCCCATTTAATCATACT
ATCCTCTTTTTTTTCTTTCCACCCTTTCCCATCAATCTTACATATTTTAC
CCCCTTTTATTCCCCTTTTTCATGCCTGCCCACGTGTTTTTATTTGTCAA
TTATTGTTACGCTCACTTTTTTCACCCTACCCTCTTAACACCCTTATTCC
TTCTTTATTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_g04.b1 MSMg01no066_g04.b1 CHROMAT_FILE:
MSMg01no066_g04.b1 PHD_FILE: MSMg01no066_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:10 2005
         (166 letters)



>mm_chr7_105763363_105763928
          Length = 566

 Score =  292 bits (151), Expect = 7e-84
 Identities = 160/163 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgttcctgcctatggttagtagataagcattgatttaggctggaaaaaagaga 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaattctgttcctgcttatggttagtagataagcattgatttaggctggaaaaaagaga 307

                                                                       
Query: 64  aatatttgagtttaaaataaaatttatagatggggatttgttacttaaagtttgttgttt 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 aatatttgagtttaaaataaaatttatagatagggatttgttacttaaagtttgttgttt 247

                                                      
Query: 124 attttttattttcccattttaggttctgatggccattgttaag 166
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 246 attttttattttcccattttaggttctgatggcaattgttaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)