BAC Information

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BAC

Clone NameMSMg01-066H11
Chromosome7 (Build37)
Map Location 104,303,676 - 104,304,001
singlet/doubletsinglet
Overlap geneGab2
Upstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
Downstream geneLOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H11.T7 (MSMg01no066_h11.b1)MSMg01-066H11.TJ (MSMg01no066_h11.g1)
ACCAG291432AG291433
length712721
length of high quality
(start - end)
484 (42 - 525)326 (69 - 394)
definitionCHROMAT_FILE: MSMg01no066_h11.b1 PHD_FILE: MSMg01no066_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:16 2005CHROMAT_FILE: MSMg01no066_h11.g1 PHD_FILE: MSMg01no066_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATCCGCGGAATT
CTTTGTTTATCTCCGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGATGGTGGCCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAGTTTTGCAACTTTATGAGGT
CCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTC
AGGAATTTTTCCCTTGTACCCATATCTTCGAGGCTTTTCCCTACTTATTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTAGAGTTCCTTAATCCACT
TAGATTTGACCTTAGTATAAGGAGATAGGAATGGATCAATTCACATTCTT
CTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAATATGCTGTC
TTTTTTCCACTGGTTGGTTTTTGCTCCCTTGTCAAAGATCTAGTGTCCAT
AGGTGTGTGCGCTCATTTTTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCGCTATACTAGTACCATGCAATTTTTATCACCTTTGCTCTGTA
TCAAAGTTTTAGGACAGGATTGGTGATTCCACTAGATGGTCTTTTTACCT
TGAGAAAAGTTT
ATGAAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACATGGGGTTCTATGTCTTTGTGCTCATTTG
ACTAAAGCTTCCTCCCCAGACTGTACGCTGCCAAACTGTTTCTGGTAAGC
AACTTTGGAAAATGAAAATTCCCTAGACATTTTGAACAAGACTGTGAGAG
GAAGACACACAGGGGCCAGGGAACTGAAACATACCCCTTCAAGTCCACTT
CTGCCTTGAGGAGGTGGGGGAGGGGAGCTGCAGAGTAGTTGTTAGAGGAA
GCAGACTTGCTGGATTTTGTTTGCAAACAATTGGGTACTGTATCCAGTGG
TTGGCTGGACAGCTGACAGCTCAAGATCGGGTCAAGATTTAGTCAAAAGT
AGGAGGGCACCACACTCTGTTTCATTAGTTACAGTTTCTGCACTCTTACA
CTTAACTTCTATGCCAGAGTTGGAAGATTCATAGAGACTCTTCTGCACGT
TAAGGTCTTCCCATATCACCCTTGCTTCCCTCTTCTCTGCCTCTCTCTCT
CCTTTTCTGTTTTCTCTCCCTGTCTTATTTCCATATATAGTAATATTACA
GCTGATCTGCTTTGGCCCTCTAGGCTTACGTCTATACGGTATTGACTGTT
TATTTTGACCACCCTCCTACTATATCCCCTTTATTCATGCTTCATCTACT
CAGTATCCTCCGTATTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h11.g1 MSMg01no066_h11.g1 CHROMAT_FILE:
MSMg01no066_h11.g1 PHD_FILE: MSMg01no066_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:16 2005
         (326 letters)



>mm_chr7_104303476_104304201
          Length = 726

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatggggttctatgtctttgtgctcatttgactaaagcttcctccccagactgtacgc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aacatggggttctatgcctttgtgctcatttgactaaagcttcctccccagactgtacgc 467

                                                                       
Query: 61  tgccaaactgtttctggtaagcaactttggaaaatgaaaattccctagacattttgaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgccaaactgtttctggtaagcaactttggaaaatgaaaattccctagacattttgaaca 407

                                                                       
Query: 121 agactgtgagaggaagacacacaggggccagggaactgaaacataccccttcaagtccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agactgtgagaggaagacacacaggggccagggaactgaaacataccccttcaagtccac 347

                                                                       
Query: 181 ttctgccttgaggaggtgggggaggggagctgcagagtagttgttagaggaagcagactt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttctgccttgaggagttgggggaggggagctgcagagtagttgttagaggaagcagactt 287

                                                                       
Query: 241 gctggattttgtttgcaaacaattgggtactgtatccagtggttggctggacagctgaca 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 286 gctggattttggctgcaaacaattgggtactgtatccagtggttggctggacagctgtca 227

                                     
Query: 301 gctcaagatcgggtcaagatttagtc 326
           ||||||||||||||||||||||||||
Sbjct: 226 gctcaagatcgggtcaagatttagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)