BAC Information

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BAC

Clone NameMSMg01-067A14
Chromosome7 (Build37)
Map Location 129,150,081 - 129,150,325
singlet/doubletsinglet
Overlap geneGga2
Upstream gene4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7
Downstream geneEars2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067A14.T7 (MSMg01no067_a14.b1)MSMg01-067A14.TJ (MSMg01no067_a14.g1)
ACCAG291869AG291870
length696701
length of high quality
(start - end)
249 (66 - 314)121 (123 - 243)
definitionCHROMAT_FILE: MSMg01no067_a14.b1 PHD_FILE: MSMg01no067_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:02 2005CHROMAT_FILE: MSMg01no067_a14.g1 PHD_FILE: MSMg01no067_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATCAAGAACTGCCCAAAACTCAGGCCAGAAGCTAACTGTCCTAAGCCCT
GTACTCTGTGGTGTACTGCCGCTCCCCAGAGGCTGTAGCTTGCCGCAGGG
AAAACATCCAATGCGGAACCCAGTGCCTTCTTGCAAAGAGCCTGACATGA
ATCGAATCCAAGCACCAGGCAGATCACACAAAGGTAGATGGCTGTAACTC
TGGTACTGACAATAACCGCAAGACACTGGCCAACTTGCAATTTCACGACT
CTTCTTGAAGTCTTTTTTTGAGGACACAAGCCAGCGACCACTTAAGCTAA
CATTTATGTTTACCTTGGCGATTCCCCGGAGTAGTGGAAAGCAAGTAAAC
CAGTAAGCATACCTCAACAACCAAACATCATGCCAGCTCTGAGAAGCTGA
GGCGTTAGACCGTGAATGAATGGCCAACTGGGATGAGGGCACACAAGTAG
AGATGAGAATACATCTTGCGAGACTCGCTTTTCTCCTCAACCATGTGTTT
CATATATGGCAAACTCCTTTACTTACTTACTGAGCCGTCTTGCCCTCTCC
AGCCTGATAGCACAGGTCACTTTATGTTGATACAGTGCTGGCCTCCCTAT
GGCAAAAGTCTGGCTCTGCATTCACTACTTTGTGAGTTTGATACCC
CAATGTAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACTCAAAGAAAC
TCTGTCTCGAATAACCCTAAAATGAAATAAAATAATTCCAGGACTCGGGA
GGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAATGT
GAGTTCCAGGACAGCCAGAGCTACACAGGAAACCTGTCCCAAAACAACAA
CAGCATCTACAGTAACAACTACAACAAACTTTCTGAAACAGAGGTATGTG
AGCTGCTGTCTCCTCTCATGCACTTTAAAAATAGGTAGCAGAGGGCTGGA
GATTTGTCTTGCCACTTCCCAGCAGCACTAACTGTTCTTACTGAGTCCTA
GGTTCAGCACCTACATCCACTTGACAGTTAACATTCATGCGTAACTCTAG
GTCTGGGTGCTCCATGCATGTAGTGCAGAGATATGTGCAGGTTAGGATAC
TGACACATACAATATTTAGTTAGCCAAGTTTTCAACATTTATTCTCCTGT
ACTTATCAATCAACTTCTACGAATGTCTGCCAGAGATCTCTGTGGCCCAT
TTGTACAATTCTATGCCTAACACTGGCAGGACAGCGAGTTTCTTATATTG
CCCACGTTCACCGGTCACATGTCACCCTGTTACTATGTTACCGTTCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_a14.b1 MSMg01no067_a14.b1 CHROMAT_FILE:
MSMg01no067_a14.b1 PHD_FILE: MSMg01no067_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:02 2005
         (249 letters)



>mm_chr7_129149881_129150529
          Length = 649

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaactcaggccagaagctaactgtcctaagccctgtactctgtggtgtactgccgctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 aaaactcaggccagaagctaactgtcctaagccctgtactctgtggtgtactgaagctcc 260

                                                                       
Query: 61  ccagaggctgtagcttgccgcagggaaaacatccaatgcggaacccagtgccttcttgca 120
           |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 261 ccagaggctgtagcctgccgcagggaaaacatcgaatgcggaacccagcgccttcttgca 320

                                                                       
Query: 121 aagagcctgacatgaatcgaatccaagcaccaggcagatcacacaaaggtagatggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagcctgacatgaatcgaatccaagcaccaggcagatcacacaaaggtagatggctgt 380

                                                                       
Query: 181 aactctggtactgacaataaccgcaagacactggccaacttgcaatttcacgactcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactctggtactgacaataaccgcaagacactggccaacttgcaatttcacgactcttct 440

                
Query: 241 tgaag 245
           |||||
Sbjct: 441 tgaag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)