BAC Information

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BAC

Clone NameMSMg01-067C20
Chromosome7 (Build37)
Map Location 96,752,317 - 96,752,597
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621562, Tmem135, LOC100039969, Fzd4, Prss23
Downstream geneLOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067C20.T7 (MSMg01no067_c20.b1)MSMg01-067C20.TJ (MSMg01no067_c20.g1)
ACCAG291977AG291978
length737709
length of high quality
(start - end)
80 (61 - 140)285 (67 - 351)
definitionCHROMAT_FILE: MSMg01no067_c20.b1 PHD_FILE: MSMg01no067_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:12 2005CHROMAT_FILE: MSMg01no067_c20.g1 PHD_FILE: MSMg01no067_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CCAGGAGCATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTTTTACTCTCCTGGCTTAT
TTTCTCTTTGCTTCTCTTGTGTTCTCTTTGCTTCTCGTCTCTTCTCTTCT
CTTCTCTTCGCGTGGCTTCGCAGGGGTTTGGGTGGGTGGGCTTCTCTTCT
CGTGGGGGTTGGCGGTTGGGGGGTGGTGTCGGCGTTGCTGTGCGGGTGGG
GGGGGTTTTGTTTGTTTGCGTTGGCGGGGTGTCCTTTGGGGGGGGGTGTT
TTTTTTTTTCCCCGCCCCCCCTCGGTGTGGGTAGCGCTGTGGGGTGGGGG
GGGTGGCCCCCCTATCGTAAAAAATGAGGTTTTGGGGGGGGGGGCGCGGT
GTTTTATTCGGGCTGAGCAGAACAGGGGGGAGAGCGGCGATTGGGGGGCG
GTGGTTTTGGGGTCGCTGTTTTTTGCAGGCCGCGGGGCTCGGGTGGAGGT
GCGTGGGGTGGTTGCGTGTTTTCTGCGCGAGGGGTTTTCGCGTTGGGGGG
TGTTGCGGGGGTTGGGCTTCGGGCGGGGGGTGGCTGGGGGGCTGGGCTTG
CGTTGGCGGTGGAGTGGGCGCGGAGGGAGGCGCGTTTGAATCATGCGGCG
GCGTGGAGAGCTGTTGTTGTGGGGTGACGGATTGTTT
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTCATCCTGTTTCTTGTTCGTGTGGGGTAGGG
AAAACAGCACATTTTCCTTTTCAGTTATCTAAGAGAGCTAAGACGTCTTT
CTTTGAGTAAAGGTATTTTTACCACTGAAACAGCGGTTTTTACGTTACAT
GTCACATATGTTGGGGTACAGAGCGAATAGCATTCTTATCCATGAAGTTT
CTCTCCTAACTGACTTGTATATAATATCACTGTTACAGGAAAAGAATCCC
AGCACTGTTTTTTCATGACTTACAACAAGACAGGGGAATTTCCCTTGTAT
TTTTTGATAAACTTGCCAGATGTAGGATTTTGGTACCACCCTCTAGAGTC
TACCACCCCAGCAAAATTGCAAGATATGCATAGATTGCATAAGCGCATTC
TCTAGGGTATCTCTATACATTTTATCAGCTTCTCAGAGATGTGTTTGATT
CAGTCAATGATTAAGACCACTACTGTATAAGCTTCTATGAGAACATATCT
TTATTTAAGGTCTAGTGAGATGCTATGATGCTCCTGTTCTCTAGAATATG
AAGTGAGACCTACTTCCTCTCAATTTTAGACCCACGCCTGTTGTTCTATC
AGTGTACCCCCATGCCCATCACATCACCTTCTTCTCCCGTTCTTTTTCAC
ATGTACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_c20.g1 MSMg01no067_c20.g1 CHROMAT_FILE:
MSMg01no067_c20.g1 PHD_FILE: MSMg01no067_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:12 2005
         (285 letters)



>mm_chr7_96752117_96752801
          Length = 685

 Score =  505 bits (261), Expect = e-147
 Identities = 276/285 (96%), Gaps = 8/285 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcatcctgtttcttgttcgtgtggggtagggaaaacagcacattttccttttcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcatcctgtttcttgttcgtgtggggtagggaaaacagcacattttccttttcagtt 260

                                                                       
Query: 61  atctaagagagctaagacgtctttctttgagtaaaggtatttttaccactgaaacagcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctaagagagctaagacgtctttctttgagtaaaggtatttttaccactgaaacagcgg 320

                                                                       
Query: 121 tttttacgttacatgtcacatatgttggggtacagagcgaatagcattcttatccatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttacgttacatgtcacatatgttggggtacagagcgaatagcattcttatccatgaa 380

                                                                       
Query: 181 gtttctctcctaactgacttgtatataatatcactgttacaggaaaagaatcccagcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttctctcctaactgacttgtatataatatcactgttacaggaaaagaatcccagcact 440

                                                        
Query: 241 gt----tttttcatgacttacaacaagacaggggaatttcccttg 281
           ||    |    |||||||||| |||||||||||||||||||||||
Sbjct: 441 gtcagct----catgacttacgacaagacaggggaatttcccttg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)