BAC Information

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BAC

Clone NameMSMg01-067J18
Chromosome7 (Build37)
Map Location 92,844,799 - 92,845,069
singlet/doubletsinglet
Overlap geneVmn2r-ps74
Upstream gene2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445
Downstream geneEG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067J18.T7 (MSMg01no067_j18.b1)MSMg01-067J18.TJ (MSMg01no067_j18.g1)
ACCAG292304AG292305
length675679
length of high quality
(start - end)
314 (39 - 352)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no067_j18.b1 PHD_FILE: MSMg01no067_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:45 2005CHROMAT_FILE: MSMg01no067_j18.g1 PHD_FILE: MSMg01no067_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CAATATCCTTACATCTGATAGAGGGCTAACATCAAAATATGTAAAGAATT
CAAGAAGTTCACCTCTCAAAAAATAATCCATTTTTAAAAATTCCATACTG
AGCTAAGCAGGGAATTCACAGGAGAAGAGTCTTGGATGGCAGATACTCAC
CTAAAGAAGTTTTCAACATCTTTAGTCATCAATGAAATTCAAATCAAAAT
CATCCTGTGATTCCACCTCACACGAATCAGGTTGACTATGATAAAATTTT
CTAGTTACAGTATATGCTGGAATGGTTGTGGAGAAAGAGTAACAGCCCTC
TCTTTTTGTTCAATTACCCCCCCGCCCAACCACACTGGACTATATTTGCC
ATTTCCTCAGACCCGCGGAAATTGAACTACTTGAAGACCCGGCTATAACA
CTCTTGGACATATACCCAAAGATGATCCATCATACTCCAAAATATGTGCT
CCACTTTATTCATAGCAACCTTTTTTTGTAATGGTGAAAGGTTGGAAAAA
TATTAGCTATCCCTCCACTGAAGATAGAATAGAAAATGTGGTTCATTTTA
CCAATGGATTACTATTCAGCTATTACAAATGAGGACATCATGAATCTTCC
AGTGATCTGGACAGAATGTGAAAGT
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGGTCACTATTTGTAATCATCACT
CCTATTCAGTTCCATCTGAAATAAACCACTAGGGACACCATGGCTAGAGG
CAGAGATGTGTCCTTTCGAGATATTTGGTAAAGATGAGGAAATTTTTCAT
TATCACTCAATGGAAGATGAAAATGACCACAGTAAAGCTAAAAAACACAG
AACATAGGCAAGAATATGAACATGATGGAGTGCAGAGGGATAATTGTAAG
ATCGGTGTGTGCTTGATTTTTATGTATTCATGCTAGAAAGTGTTTGTTTG
TTTTTTTTTCATCATTTTACCACCCCCCCCCCCAACTTCTTGTTATTCTC
TAAATAATGCAAGTGGCCCACAAAAAAAAAAAAAGAATTCTCAGCGGAGG
AATACCTAATGGCTGAGAAGCACCTGAAAAAAAAAAAAGATCAACAGCCT
TAATCATCAGGTAAATACAAATCAGAACAAGACTGAGATTCCCCCTCCTA
ACCAACAGAATGCCTATGATAAATATTCGGGTGACAACTGATTCTGGTGA
GGATGTGTTATAAGAGGATCACCCTTCCAATGCTAGTGTGTTTGTATGTG
TTTCAAATCCCCTGGAATTCAATCCGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_j18.g1 MSMg01no067_j18.g1 CHROMAT_FILE:
MSMg01no067_j18.g1 PHD_FILE: MSMg01no067_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:46 2005
         (286 letters)



>mm_chr7_92844599_92845284
          Length = 686

 Score =  449 bits (232), Expect = e-130
 Identities = 261/276 (94%), Gaps = 10/276 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggtcactatttgtaatcatcactcctattcagttccatctgaaataaaccactaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 471 catggtcactatttgtaatcatcactcctattcagttccatctgaaaaaaaccactaggg 412

                                                                       
Query: 61  acaccatggctagaggcagagatgtgtcctttcgagatatttggtaaagatgaggaaatt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acaccatggctagaggcagaaatgtgtcctttcgagatatttggtaaagatgaggaaatt 352

                                                                       
Query: 121 tttcattatcactcaatggaagatgaaaatgaccacagtaaagctaaaaaacacagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tttcattatcactcaatggaagatgaaaatgaccacagtaaagctaaaaaacacagaaca 292

                                                                       
Query: 181 taggcaagaatatgaacatgatggagtgcagagggataattgtaagatcggtgtgtgctt 240
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 291 tagtcaagaatatgaacatgatggagtgcagagggataattgtaagatcgatgtgtgctt 232

                                               
Query: 241 gattttt-----atgtattcatgctagaaagtgttt 271
           ||          || |||||||||||||||||||||
Sbjct: 231 ga-----gcaaaatatattcatgctagaaagtgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)