BAC Information

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BAC

Clone NameMSMg01-067M03
Chromosome7 (Build37)
Map Location 75,671,511 - 75,671,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800
Downstream geneEG384639, Arrdc4, LOC384741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M03.T7 (MSMg01no067_m03.b1)MSMg01-067M03.TJ (MSMg01no067_m03.g1)
ACCAG292415AG292416
length695700
length of high quality
(start - end)
316 (47 - 362)253 (77 - 329)
definitionCHROMAT_FILE: MSMg01no067_m03.b1 PHD_FILE: MSMg01no067_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:57 2005CHROMAT_FILE: MSMg01no067_m03.g1 PHD_FILE: MSMg01no067_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTCCCAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCGTCTAACCAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTGGTCTGAATTTCTCTATCTTTGTTGGCCC
TTTCTGTGGTTTATTTTTTCACAGCACCACCGGCTTCTTAAAATGATTTG
GCTAGAGTACCTTCTACTTCTATTATGTGAAATAATTTGTGCCGAATTGG
AACTATATCTTCTTTGAAAGTCTGGTACAACTCTGCACTAACCCCATCTG
ACCCTGGGCTTTTTTTTGGTTGATAGACTATTATTAACTGTTTTCTATTT
CCCTACGTGATCATGCCACTGTTTATAAGCCCCATTTTGATCCTGATTCT
TCTTTTGATACCTTGTTTTTTGTCCGAAATTCCGTTCCTCTCGCTCTGTT
ATTTTCTACATTTTTTTATCATTTCCCCCTGCTCAACTGATTGCA
TACGATGAAGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAAGCAGCTGAAGAAAACTG
TGGATCCCTGCATGGAAGAATTCCTCCCTTTCTTTGTCATAAGGAGGATA
AACACATGGCAAGTTGAAATTTCCTTAAGAGAGCTTCACAGAGAGGTAAC
CCAAATTCAGAAAGACAAATGCTATGGTTTCTCTCATTGGCAGATGTTAG
CTTCAGACTTTCAGATGTGTGTTTTATTTGGAAGAACCAACGAGGTCATT
AAAATGTAAGGGAGGGAGCTGGATTTCTAGCAATGAGAGAACAGAGTGAT
ATAAAGGCCTAAAATGTATTATCGCAACACGACCAGCCTTAGTGAGGGTT
TTACTGCTGTGAACAGACCCCATGACCATTACAAGTCTTATAAAGAACAT
TTAATTTGGTGCCGGCTTACAGGTTCATAGGCTCACCCCCATTATCATCT
ACGCAGGATGACTATGCACACATCCAGGCAGGCTTGGTGCAGTCCCTCCT
GATATGTCTACATTTTTCCTCTGCACGGCCGCTCCCCAAAATACTGTCTA
TCTTATCGCGCTAACACCATGTCCTTAATTCCCCATTTCCTTGTGCCTTA
CCTAATCCTATACACCTCCCCCCTCCTTTTCTTGCCCTTCCTCTGGCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m03.g1 MSMg01no067_m03.g1 CHROMAT_FILE:
MSMg01no067_m03.g1 PHD_FILE: MSMg01no067_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:57 2005
         (253 letters)



>mm_chr7_75671311_75671963
          Length = 653

 Score =  424 bits (219), Expect = e-123
 Identities = 243/251 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtaagcagctgaagaaaactgtggatccctgcatggaagaattcctccctttctttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 tcagtaagcagctgaagaaaactgtggatccctgcatggaagaattcctgtctttctttg 260

                                                                       
Query: 61  tcataaggaggataaacacatggcaagttgaaatttccttaagagagcttcacagagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcataaggaggataaacacatggcaagttgaaatttccttaagagagcttcactgagagg 320

                                                                       
Query: 121 taacccaaattcagaaagacaaatgctatggtttctctcattggcagatgttagcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 taacccaaattcagaaagacaaatgctatggtttctctcattggcagatgttagcttcaa 380

                                                                       
Query: 181 actttcagatgtgtgttttatttggaagaaccaacgaggtcattaaaatgtaagggaggg 240
           ||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||
Sbjct: 381 actttcagatgtgtgttctatttggaagaaccaaagaggtcaggaaaatgtaagggaggg 440

                      
Query: 241 agctggatttc 251
           |||||||||||
Sbjct: 441 agctggatttc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)