BAC Information

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BAC

Clone NameMSMg01-067M24
Chromosome7 (Build37)
Map Location 89,387,144 - 89,387,430
singlet/doubletsinglet
Overlap genenone
Upstream genePde8a, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M24.T7 (MSMg01no067_m24.b1)MSMg01-067M24.TJ (MSMg01no067_m24.g1)
ACCAG292457AG292458
length714739
length of high quality
(start - end)
288 (66 - 353)287 (66 - 352)
definitionCHROMAT_FILE: MSMg01no067_m24.b1 PHD_FILE: MSMg01no067_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:01 2005CHROMAT_FILE: MSMg01no067_m24.g1 PHD_FILE: MSMg01no067_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTT
GTTCATTTCCTGAACCCATTTTTTAATGGGGTTATGTGATTTTCTGAAGT
CCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTT
GTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTACC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCTTATATCTTCAAGGCTTTTCCCCACTTTCTCCTC
TATAATTTTCTGTGCCTCCGCCCCTCATGTGAAGTTCCTTGATCCACTTA
GATTTGACCTTACCACAAGGAGATAAGTATGGATCGATGCACATTCTTCT
ACATGATTTCAACCAGTTGTGCCAGCACCAATTATTGAAAATGCTGTCTT
TCTTCCATTGGATGGTTTTAGCTCTTCTTGTCCAAGATCACGTGACCATA
GGTGTGTGGGTTCATTTTTTGCTCCCTCAATTCTATTCCTTCGCGCCAAT
TGTCTGTTTCTATCCCAGCACCTTGTCCCTTCTATCATTACTGCTCTGTA
TTAAAACTTCAGCTCCCTCTTGGCGATACCCCCACACGATCTTTCTTCTT
TGCTTTACCTTTTC
GATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCAGAAATTCACTGGAAGGCGAGAATTGACTCCCTCAATGTC
ATCTGACTTCCAGTGAACTTAGAATCCCTTCCGGAGATAAGCCCACACCA
GGCCTGAGGACAACCTCACTTGGTGTCAGGCAAGACCGTCAGGGATTGGA
TGCATGGTTCAGAGCAGCCTGAGCGGAGGGGCTGAAGCCAGACTTCTTTC
CGCTTCTCATCTCTTGGTGGCCCGCTGGGCTGCTCCCTTCAGTATCTTCC
TAAGGAACAGTGCCTTGAGCTTTGTCACTTATATTTTTAGTTCATCTAAA
AATCCTATTCTGTCCTGCGCGTGTGTGTGTGTGTGTGTGATAGAGAGAGA
CATATACCCCCCCCCCCATATTACTACCCTCTCCTTTTTCCCTTTTTCCC
TTCCCCCTTCCTCTTTTTTTCCTCCTTTTTCTTTCCTCATACTTCTTCTC
TCACTCTTTCTTCTTCGTTCTTTCCCTTTTTTTTGCCTTCCCTCCTTATT
CCAATTAATGCGTTTTATCTCCTTTTCCTCTTCTACCTTACTCCTTCTTT
CTTCCTTTTTCTCTTCTTCCCCCATTACTCCTCCCTCTTTCCTCTTTTCT
CTCTCTTCCCTTTCTTTTTTTATTCTTTTCTTCTTTCTCTTTTCTCTCCC
TCTTTCTTCCCCCCTCTTCTTTTTCTCTCTCTTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m24.g1 MSMg01no067_m24.g1 CHROMAT_FILE:
MSMg01no067_m24.g1 PHD_FILE: MSMg01no067_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:01 2005
         (287 letters)



>mm_chr7_89386944_89387630
          Length = 687

 Score =  470 bits (243), Expect = e-137
 Identities = 276/287 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactggaaggcgagaattgactccctcaatgtcatctgacttccagtgaacttagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcactggaaggcgagaattgactccctcaatgtcatctgacttccagtgaacttagaat 260

                                                                       
Query: 61  cccttccggagataagcccacaccaggcctgaggacaacctcacttggtgtcaggcaaga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttccggaaataagcccacaccaggcctgaggacaacctcacttggtgtcaggcaaga 320

                                                                       
Query: 121 ccgtcagggattggatgcatggttcagagcagcctgagcggaggggctgaagccagactt 180
           | |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 321 cagtcagggactggatgcatggttcagagcagcctcagcagaggggctgaagccagactt 380

                                                                       
Query: 181 ctttccgcttctcatctcttggtggcccgctgggctgctcccttcagtatcttcctaagg 240
           ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 381 ctttccgcttctcatctcttggtggtccgctgggctggttccttcagtatcttcctaagg 440

                                                          
Query: 241 aacagtgccttgagctttgtcacttatatttttagttcatctaaaaa 287
           ||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct: 441 aacagtgacttaagctttgtcacttatatttttagttcacctaaaaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)