BAC Information

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BAC

Clone NameMSMg01-068H14
Chromosome7 (Build37)
Map Location 55,839,500 - 55,839,692
singlet/doubletsinglet
Overlap genenone
Upstream geneMrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2
Downstream geneMrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik, 5330421F07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H14.T7 (MSMg01no068_h14.b1)MSMg01-068H14.TJ (MSMg01no068_h14.g1)
ACCAG292960AG292961
length725727
length of high quality
(start - end)
193 (131 - 323)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no068_h14.b1 PHD_FILE: MSMg01no068_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:55 2005CHROMAT_FILE: MSMg01no068_h14.g1 PHD_FILE: MSMg01no068_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGATGCCGC
GGAATTCTCAACTGAGTATCAATAAAGGTTGAGAAGTGCCTGTAACAATG
TTCAAAATCCTTAATCATCAGGAAAATCCAAATCAAAAGAACCCTACAGT
ATTCTTATGTGTGGTGGTAAGCTATCTCTGGCAAACAGATACATCTCCTG
AGTCAGTTGTCAATAAGAAACATGCAGAGACTGCCTGAAAGCTGGTTCTT
GTGGAATATTTCTCAGGTGAACCTGTCATTTCTTGCACTTGGGTCTGCCC
TGAGTGTCACTCTTTTGAGTCATTCTTTATTTCTAGCCTGNTATCAACAA
TTGGNCAGTATCTTTTTTTTTTTTTTCCCCCCCCCCCCACCTTCTATGGT
ACCTCTTTACTGATAGTGCTTGCTTTTTTTTAAAAAAAAGAGTCCATGGG
TTGAGCAGTGTCAAGCAATGTGAGCCAGTGCTGCACCTTATCAGATCTAA
ATTTATGTTTGCACAATAAACAATGAAGAATCAATAAACTATGATGAAAA
TTATCAAATCAGGTGTAATTGCTTACTACTGATTGAAATGAACATCAGGT
TATTATAACATGAATCTAGAAGTATTTCTATCTGTAAGAAAATCTAGCCT
ATGCAAGGATCATTATATTTTTTGACCCTGTATCTTCTTAGTATATCCTC
TTTATCGTTATTTACGTCTAAGTAG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGGCAAAATGTGTC
CAAACATAGGGGACACAATAAAAGCAGCTCTGAAAGAAAAGTCCATATCA
CTAAGTGCCTCCATAAAGAAATTAGAGAGTCCTTATTCCAGCAATTTGAA
AACACATCAGAAAGCTCTAGAAAACAAAAGAAGCACACACATCCAAATCG
GGTATATGGCAGGAAATACTCAAAATTAGGAATGAAATCAATTAGAAACA
AAGAAAACAATACAAAGAATCAACAATACCAAGAGCTGGTTCTTTAAGAA
AATCAACAAGATAGACTTATTTTTAGCCAACCTACCCAACAAGCAGAGAC
CATTTATCCCAATAAACAAAATAAGAAATGAAAAAAGAGACATAACCGAC
AATGAGGAAATTCAAAGAATCATTAAGTCATAGTTCTAAAGCCTTTACTC
CACAAAAATGGAAGATCTAAATGAAATGGATAATTTTCTAGAAAGGCACC
ACTTACTTAAATCATGATCAAGCAAAATATTTAAATATTTCTATAACTCC
CAAAGAAATAGAAGCAGTCATCAAATGTCTTCCCATAAAAGAAAGACCAG
GGCCAGATGGCTTTATTGTAGAATTCTATCAAACATTTCAAAGAAGTCCT
AATATCCATGTCTCCTCATAATATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h14.b1 MSMg01no068_h14.b1 CHROMAT_FILE:
MSMg01no068_h14.b1 PHD_FILE: MSMg01no068_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:55 2005
         (193 letters)



>mm_chr7_55839300_55839892
          Length = 593

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcaaaagaaccctacagtattcttatgtgtggtggtaagctatctctggcaaacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatcaaaagaaccctacagtattcttatgtgtggtggtaagctatctctggcaaacagat 334

                                                                       
Query: 61  acatctcctgagtcagttgtcaataagaaacatgcagagactgcctgaaagctggttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acatctcctgagtcagttgtcaataagaaacatgcagagactgcctgaaagctggttctt 274

                                                                       
Query: 121 gtggaatatttctcaggtgaacctgtcatttcttgcacttgggtctgccctgagtgtcac 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtggaagatttctcaggtgaacctgtcatttcttgcacttgggtctgccctgagtgtcac 214

                        
Query: 181 tcttttgagtcat 193
           |||||||||||||
Sbjct: 213 tcttttgagtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)