TTTTTTTCTTTTTCTCTTCTCCTTTCTTCTTTTTCCCCCCTCCCCGTCNT
GAAAATTNTTNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATCCGCGGAATCACTCTGTAGACCAGGCTGGCTTTGGACTCA
CAGACATCCTCCTGCCTCTGCCTCCAAGTGCTGGTATTTAAGGTGTGTAC
TGTCACATCTGGTGAAAGAGAATTTTTTAAAAAGTGTTTAAAGCCTTGTG
AAGGTCAGGAGACCGAAGTCTGATCCTTGGGGGTTAACTTCTGGTGGTTT
TACACAGAGTTCTTAAAAAGTAAAGATGTGTCATACCAAGGTCGCTTCTG
TTTTTCTATTAAATAAATATGCCATGTTCCATCTGAATTCTGAGACAATG
TACTAACTCAGACTGTCTAGAAGCTGATTTTTTTTCCCTCCCCCCCACCC
CCTCACTCATTTCACTATTCATCGTTACTCACGAGCACCCCCAGAAACAA
TGTAATTTCTAAAATCCTATGTGTATAGATGTTTTGCCTACTTTTATGTC
CGTGTGCATGTCCGGTGTTCATAGAGAACACAAAAGGTCTTCTTTTCCTC
TTGTAACCGTATTTAAAATTGTTTTGGCATCCACCATCGTATGTGCCTAC
GCACCCTAATTCCAAACTCCTTTTGTATTTATTATTCCATTGTTTACTCA
ACTTTTTTGGATCCCCTCTTCTCCAAGTACTTCTTGGCCCTTTCTTGTTT
TTCTTACTTGATACAATCTTCACATTTTTGTCTATATTCACTCTTATATG
ATTATTAACA

CCTTCCTTTTCCCCTTTTCCTCCCCTTCTTTTTTCCCCACTCTTCNNAAN
TAGGATATTTNNTGGGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATCCC
TTTTACGAGGGAAGCTTACACTGGGGAGCCCACCCTGCCCCATTTCAGTT
GTGATGTATCTCACTGTGGTCCCCAGGTCCCCGGCTCTTCCTGTCATGTC
CCATTGATGTGGATGGTTCCAGAGTGTGGTTCACTGACCTGTGGAACTAC
TCCATAATCCCCTACCTCCTGTAAGCTGTCAGAGAATGTCTCCAGGTGAG
AAGTATGCTCCTTTTGGCTCCCTCAGATTTGAGTGCCTTGTTGCTCTCCT
GCGTGGACTTCCGTAATGTCCTCGGTGTTTTTTTTTGCCGCTCCCCCCCC
CTTGTCTCAGCTGCTCATTATTATTGCGCCTCTTGTCTCCCCCATTTATA
AAAAAAATCTGCCCGATCGGGGGGGGGAATTTTACCATTATTACTCCCGT
TTTTAGTATAGCTGCTAATCGATCACATGTATACCCTGTTCCCCTAATCG
CTCCTTTAACTGTGTGCATATGTCACATAACAATATTTATTTTTTCTTTT
TTCCGTATTCTCCCATTTTTCCCCCCCTCTTGTTTTTATTTTTCCTTTAA
CTGTTCCCTACCATTAATATTCTCCTATATTCTTTGCCATTTTGCCTCTT
ATCCATCTCTTCTCTTATTTCTCCTCTATCTCTTTTCTATTGTTCCTTTC
CCCTCCTATTTTTATTCCCCTTACCTTCTCCCATTCTCCCCTCTTTCTTT
TTTG

Query= MSMg01no068_o05.b1 MSMg01no068_o05.b1 CHROMAT_FILE:
MSMg01no068_o05.b1 PHD_FILE: MSMg01no068_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:28 2005
         (288 letters)



>mm_chr7_56980915_56981602
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctgtagaccaggctggctttggactcacagacatcctcctgcctctgcctccaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cactctgtagaccaggctggctttggactcacagacatcctcctgcctctgcctccaagt 522

                                                                       
Query: 61  gctggtatttaaggtgtgtactgtcacatctggtgaaagagaattttttaaaaagtgttt 120
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 521 gctgggatttaaggtgtgtactgtcacatttggtgaaagagaattttttaaaaagtgttt 462

                                                                       
Query: 121 aaagccttgtgaaggtcaggagaccgaagtctgatccttgggggttaacttctggtggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 aaagccttgtgaaggtcaggagaccgaagtctgatccttgggggttagcttctggtggtt 402

                                                                       
Query: 181 ttacacagagttcttaaaaagtaaagatgtgtcataccaaggtcgcttctgtttttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 401 ttacacagagttcttaaaaagtaaagatgtgtcataccaaggtcgcttctgtttttccat 342

                                                           
Query: 241 taaataaatatgccatgttccatctgaattctgagacaatgtactaac 288
           |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 341 taaataaatatgccatgttcgatctgaattcagagacaatgtactaac 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no068_o05.g1 MSMg01no068_o05.g1 CHROMAT_FILE:
MSMg01no068_o05.g1 PHD_FILE: MSMg01no068_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:28 2005
         (183 letters)



>mm_chr7_56853850_56854432
          Length = 583

 Score =  323 bits (167), Expect = 4e-93
 Identities = 176/179 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatcccttttacgagggaagcttacactggggagcccaccctgccccatttcagttgt 60
           ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 agtattccttttatgagggaagcttacaatggggagcccaccctgccccatttcagttgt 260

                                                                       
Query: 61  gatgtatctcactgtggtccccaggtccccggctcttcctgtcatgtcccattgatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtatctcactgtggtccccaggtccccggctcttcctgtcatgtcccattgatgtgg 320

                                                                      
Query: 121 atggttccagagtgtggttcactgacctgtggaactactccataatcccctacctcctg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggttccagagtgtggttcactgacctgtggaactactccataatcccctacctcctg 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)