BAC Information

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BAC

Clone NameMSMg01-070H05
Chromosome7 (Build37)
Map Location 97,293,550 - 97,293,936
singlet/doubletsinglet
Overlap genePicalm
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik
Downstream geneCcdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H05.T7 (MSMg01no070_h05.b1)MSMg01-070H05.TJ (MSMg01no070_h05.g1)
ACCAG294469AG294470
length755688
length of high quality
(start - end)
387 (127 - 513)55 (75 - 129)
definitionCHROMAT_FILE: MSMg01no070_h05.b1 PHD_FILE: MSMg01no070_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:31 2005CHROMAT_FILE: MSMg01no070_h05.g1 PHD_FILE: MSMg01no070_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNNNNATCTTATT
CATAATTTCTATAATTGCGGCCGCTAAACGACTCCTATTCCAAGAGAGAC
CGCGGAATTCTACCATTAACAAGAAATGTATAAACACACACACAAAAGCA
GCAGTCCTTTCAACAAGCAACTAAAAATTCTTAATAGTAAAAAATGTAAT
ATTCCTATAGTTGTGTTAAGCAAAATGAAACATAAAATAAGGCTATGGCA
AGAACCTATAATTCATCATTTAACTATTCTAAGATGTTACTTTCTTAGAA
ACAGTACAGAGTAACTGGTTAATGACACTTCTGATAACATTCTCAACTGT
TCTATTATGATAAAGCCAAAAATACTGGAAAATTACTTACTGCACCTCAC
CTCGTCTAGGAAAATAGTTACGAGCACTGCTACTAACACCCTTTACCTTT
TCCTAATTAAAAACTAAACTAACTCCGGTATAAGTTCTCTGAACTGACAA
GTGAACCAACTTAAGATCAATATCACATTAAATGTTTTCAACATTATAAC
ATTAATTTTATTCAAGAACAAGTTAACACTTAAAAACTGTTCACCGAAAG
GTTCACTAGCCTAGTACACTAAACCCACTGTCCGTCATCAAAGGCACATT
AAAAGCATATGTAATAGAGCACTCCCTGCCTATCAACATTCAAGATGCAA
AACCACGGAAGATGTACGGTTTAATGTTAGCCCTCACTACATGAGGACCT
TTATG
TACATGAAGTGTTAGCCTGGCGGCGCCTGTTCACAAATGGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGCCTGGTCTACATATTGACCTGCA
GGCAAGCCAAGGCTACCTTGCCTTAAACAAACAAAACAAAACAACAATAA
AAACATTTTGTCAAAGGCCTATGAAGAACCTTCTTTCCATCCAGAATTAG
GAGACTTTTGAATTGTTCCTCTGTTTGATCATAGAGAATTGCTATGCATT
ATTGTTCAATGACTGTTTCAGGACAAAATCAACATATTTGATGCCATTAT
CATTTTGAGGAAAATCTTACTCGGCTCGTACCCTGGGTTTTGGGGAATAT
CCACTGCTTTGAACCGTTCACTGCTTTCCATGGATTCTTCACCAAGCCTT
CGAGCATACCGACCAGATTTCATTCTATAGACTGATAATATCTACACTGC
TAACATCTAAGAAACTGATCCCAGCCTGTCTTGGTGGTGCATGCCCATAA
TTCCTTCTTTCATGGGGCCTGAGACTGGCGGATAATCAGTTCCTAATAAA
CCATAGCTATACCGCATGACCCTGTCTGATAATAAATATATATAAGGTAA
CAAACAGATGTCTAATAATGATTATATATATACTGTTTCAATTGTTCCTT
AAAAAAAAACCATGCCTGTCTCCGTCTCGTTTGACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h05.b1 MSMg01no070_h05.b1 CHROMAT_FILE:
MSMg01no070_h05.b1 PHD_FILE: MSMg01no070_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:31 2005
         (387 letters)



>mm_chr7_97293350_97294136
          Length = 787

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtataaacacacacacaaaagcagcagtcctttcaacaagcaactaaaaattcttaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgtataaacacacacacaaaagcagcagtcctttcaacaagcaactaaaaattcttaata 528

                                                                       
Query: 61  gtaaaaaatgtaatattcctatagttgtgttaagcaaaatgaaacataaaataaggctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtaaaaaatgtaatattcctatagttgtgttaagcaaaatgaaacataaaataaggctat 468

                                                                       
Query: 121 ggcaagaacctataattcatcatttaactattctaagatgttactttcttagaaacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggcaagaacctataattcatcatttaactattctaagatgttactttcttagaaacagta 408

                                                                       
Query: 181 cagagtaactggttaatgacacttctgataacattctcaactgttctattatgataaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cagagtaactggttaatgacacttctgataacattctcaactgttctattatgataaagc 348

                                                                       
Query: 241 caaaaatactggaaaattacttactgcacctcacctcgtctaggaaaatagttacgagca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caaaaatacaggaaaattacttactgcacctcacctcgtctaggaaaatagttacgagca 288

                                                                       
Query: 301 ctgctactaacaccctttaccttttcctaattaaaaactaaactaactccggtataagtt 360
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 287 ctgctactaacaccctttaccttttcctaattaaaaactaaactaattctggtataagtt 228

                                      
Query: 361 ctctgaactgacaagtgaaccaactta 387
           |||||||||||||||||||||||||||
Sbjct: 227 ctctgaactgacaagtgaaccaactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)