BAC Information

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BAC

Clone NameMSMg01-071B09
Chromosome7 (Build37)
Map Location 135,930,496 - 135,930,967
singlet/doubletsinglet
Overlap genenone
Upstream geneSetd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
Downstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B09.T7 (MSMg01no071_b09.b1)MSMg01-071B09.TJ (MSMg01no071_b09.g1)
ACCAG294954AG294955
length801695
length of high quality
(start - end)
46 (44 - 89)472 (79 - 550)
definitionCHROMAT_FILE: MSMg01no071_b09.b1 PHD_FILE: MSMg01no071_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:22 2005CHROMAT_FILE: MSMg01no071_b09.g1 PHD_FILE: MSMg01no071_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGATTCCCCCCAACTGGGCAAAGGACATTGCCCTACAGACAGGGA
GATGGGTGGTCACACTCGCAGGAAGAGAGGATGGGGGAGTAGGAGAGGAA
GAGGGAATGCTTTTTTTTCGCCCCCTCTGTTCTGTCTTTNCTTTTCTTCC
TCCCCCCTTCCCTTCTCCCCCTCCCTCTCCCTCTTCCCTTTCTCCCTTCC
CCCTCCTCTCTCCTCTCCTCTCTTTCTTTTTTCCCCCTCTTTTCTCCCTC
CCTCTTCTTTCTCTTTTTTTTTTCGTCTTCTTTTTTTCCTCCTTCTCCCT
TTTTTTTTCTCCCTCCCTCCCTTCCCCCCTTCCCCCCCTCCCCCTCCCCC
CCTCCCTTTCCCTCTCGTCTCCCCTTTTCTTTTCTTTTATGCCCTCTCCC
CCCTTTTTTTCTTCCTCTCTTTTTTTTTTTTCTTTTTCCCCTTTCTTTCA
CCTCCCCCCCCCCCTCCCCTTTTTCTCTCTCCCCCTTCCTCTCTCCTCTT
TCTCTTTCTTTTTCCCCCCCCCCTTTTTTCCCTCTCCCCCCCCCTTTTCT
CCCTCTCTCTTTTCTTTTCTCCCCCTCCTCTCCTTTTCTTTTTTTTCCTC
CTTCTTTTCCTCCTCCCCCCCCCTTTTCTCTCTTTTCTCCTTTCTCTCCC
CCCCCTTCTTTTTTTTTTCCTCCCCCCCCTCCCTTCTTCTTTTTCGCTTT
TTCCCCCTCTTTTTTTTCTCCCCTCTTTTTTTTTCTCTTTTTCCTCTTTC
G
NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGAAGGCAGGGACAGGCA
GAGACCAGGATAGCCCAGCTGGTGAGTCCCAAGTGGCAGTGAGAGATCCT
GCCTCAAAAAACAAGGTGGGTGGCATTTATGAGGAAGGACATTAGAAGCT
GACCTTGGTCTCCACATGCATGCTCATGTACACACATCTAGTGTAGGAAG
TGTCCCTAGCCTGTGTCCCCAGCCCTGAGCTCTTGGTAGTCACTGCTGAA
GGTTGGCTCTCTGCTCTTGCTTCACCCCTGCTTCCTCTGCTCCTGGTTGT
CACAATAAACGCCATTCTTCTTCCAGGGCCTCTGCTTCAGTTCTTGACTC
TAGGTTCCTTCCCTCACCTCCATAATGGACATAAACTTTTAAGCTGAATA
AACCCCTTCCTCCAAAGTTGTTCTTGGGTGTGTTGTTTTAACCTAAAATA
GAAATCCTAACTACGGCAGGAGTTGGGGCATGATGGGATTTGAGGCCCCT
CAGTGAGAAGGAATCCATGCTGGGCTCCATACTTCCATCTGGTCCTATGA
CCAGGGATATCACTGTCCCTAGGAATCCTACTGATGTTTTGCCAGATGGA
CATGTTGTTCGCTAAACTGCCTTCTAAATATCTAAACTTATACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b09.g1 MSMg01no071_b09.g1 CHROMAT_FILE:
MSMg01no071_b09.g1 PHD_FILE: MSMg01no071_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:22 2005
         (472 letters)



>mm_chr7_135930296_135931167
          Length = 872

 Score =  897 bits (464), Expect = 0.0
 Identities = 470/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggaaggcagggacaggcagagaccaggatagcccagctggtgagtcccaagtggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggaaggcagggacaggcagagaccaggatagcccagctggtgagtcccaagtggca 260

                                                                       
Query: 61  gtgagagatcctgcctcaaaaaacaaggtgggtggcatttatgaggaaggacattagaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtgagagatcctgcctcaaaaaacaaggtgggtggcatttatgaggaaggacatcagaag 320

                                                                       
Query: 121 ctgaccttggtctccacatgcatgctcatgtacacacatctagtgtaggaagtgtcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaccttggtctccacatgcatgctcatgtacacacatctagtgtaggaagtgtcccta 380

                                                                       
Query: 181 gcctgtgtccccagccctgagctcttggtagtcactgctgaaggttggctctctgctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgtgtccccagccctgagctcttggtagtcactgctgaaggttggctctctgctctt 440

                                                                       
Query: 241 gcttcacccctgcttcctctgctcctggttgtcacaataaacgccattcttcttccaggg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gcttcacccctgcttcctctgctcctggtcgtcacaataaacgccattcttcttccaggg 500

                                                                       
Query: 301 cctctgcttcagttcttgactctaggttccttccctcacctccataatggacataaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctgcttcagttcttgactctaggttccttccctcacctccataatggacataaactt 560

                                                                       
Query: 361 ttaagctgaataaaccccttcctccaaagttgttcttgggtgtgttgttttaacctaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagctgaataaaccccttcctccaaagttgttcttgggtgtgttgttttaacctaaaa 620

                                                               
Query: 421 tagaaatcctaactacggcaggagttggggcatgatgggatttgaggcccct 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaatcctaactacggcaggagttggggcatgatgggatttgaggcccct 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)