BAC Information

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BAC

Clone NameMSMg01-071I18
Chromosome7 (Build37)
Map Location 89,159,105 - 89,241,796
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071I18.T7 (MSMg01no071_i18.b1)MSMg01-071I18.TJ (MSMg01no071_i18.g1)
ACCAG295304AG295305
length712710
length of high quality
(start - end)
192 (66 - 257)107 (71 - 177)
definitionCHROMAT_FILE: MSMg01no071_i18.b1 PHD_FILE: MSMg01no071_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:59 2005CHROMAT_FILE: MSMg01no071_i18.g1 PHD_FILE: MSMg01no071_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,241,609 - 89,241,796)(89,159,105 - 89,159,211)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTC
AGAAATGAGGCACACAGATGACTGACTTTCAACTGAGGTACCCACACAAG
TCAACAAGAGGGAAGGTCGCCTTTCAACCAATGGATCTGAGAAACAACTG
GGTAAACACACAGGACTAAGCAAGCCTGGACCCCTATTGTGCACACACAC
AATGTTAGTATGAGATGGACTGCACACCCAAACATGATATCTAGGGCTCT
AACTCTTTAGATGTAAAAGAAGCAAAGACATGTAAAGCACTAAATATAAA
AGAACATTTTGAAGGTGGTGTTGCTGCACACTTTAATCCCAGCACTCATG
AGGTAGAGGCAAGCTGATCACTGAGTTCAAGGCCAGCCTAGTCTACAAAG
CGAGTTCTAGGACAGTCAAGGCTACCTAAGAAATCCTGTCTTCAAATAAC
AAAATACCAAAAAGAACATTTGATAAATTGGATGACATTAAAGGTAAAAT
GATGTTCTTATAATACACCATGGAAAACATGAAAGGCAGATGCCATACTG
TTATAATTTACAACACGTCTTCCGATTTGTGACCATATAAACGAACCCCT
CTAAAATCTATCATTAAACGTTAAAGAGCTTGACTCACAACCGGATAAAC
AATTAACTTATACCCTTCAGACTCTTTGAACATCCACCAAAAAGGTGACC
TATATAATCGTA
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTACTCTCAGCGGATCCTCCAGTTTGCA
TGGATTAGCAGGTTCACTTTGCATAATAGGTTGGCCAAAAGTACACTTCT
GAGGGCTACTTATATATCTGCTCTAAGAAATAATCCCAATTAGAGGCCTC
TTCCCTTCTTAGTACAGAAGACAAGGTTCATTAATGATAATGAGGGTCTG
AGCTACTTCAGGTCCTAGGTTTGTAATTAATCTTGTACAGGCTTTCCCGC
TTGAAAATATTGAAGAATATCAAAGTCGTGAAGATCGCCCCCTGCTAGAA
CTCATGCACGTGATATAGGATTGTCAGGCTCCTACTCTGCGTTTTGGCTG
GTCTTGCACAATGTTACTTCTGACGATGCGCTCAGCTTGGAAGGTGTCAT
CCTTAATTACGTCTCATGATATTCTTTAAATTATTCTACAGTATTGACTA
TGATAAATCCATACTCTCTATATTCCATGTTATTTGATAATATGATTCAT
ATAACTGATTACACACAGGATCTCACACCTTTCTATAATTGTCTTGAATG
TCTTCGGTTATATACCCCCCCCCCCCCATTATTATAAGCCTTGTTCTTTC
CAACTCCCTTCATATATTTACTCTTGCCTATCTATTGCCCACCCGTTATT
CCTTGTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_i18.b1 MSMg01no071_i18.b1 CHROMAT_FILE:
MSMg01no071_i18.b1 PHD_FILE: MSMg01no071_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:59 2005
         (192 letters)



>mm_chr7_89241409_89242000
          Length = 592

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgactgactttcaactgaggtacccacacaagtcaacaagagggaaggtcgcctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agatgactgactttcaactgaggtacccacacaagtcaacaagagggaaggtcgcctttc 329

                                                                       
Query: 61  aaccaatggatctgagaaacaactgggtaaacacacaggactaagcaagcctggacccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaccaatggatctgagaaacaactgggtaaacacacaggactaagcaagcctggacccct 269

                                                                       
Query: 121 attgtgcacacacacaatgttagtatgagatggactgcacacccaaacatgatatctagg 180
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 268 attgtgcatacacacaatgttagtatgagatggactgcacacccaaacatgaaatctagg 209

                   
Query: 181 gctctaac 188
           ||||||||
Sbjct: 208 gctctaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_i18.g1 MSMg01no071_i18.g1 CHROMAT_FILE:
MSMg01no071_i18.g1 PHD_FILE: MSMg01no071_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:59 2005
         (107 letters)



>mm_chr7_89158905_89159411
          Length = 507

 Score =  199 bits (103), Expect = 3e-56
 Identities = 106/107 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttactctcagcggatcctccagtttgcatggattagcaggttcactttgcataatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttactctcagcggatcctccagtttgcatggattagcaggttcactttgcataatagg 260

                                                          
Query: 61  ttggccaaaagtacacttctgagggctacttatatatctgctctaag 107
           ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttggccaaaagtatacttctgagggctacttatatatctgctctaag 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)