BAC Information

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BAC

Clone NameMSMg01-071L18
Chromosome7 (Build37)
Map Location 144,379,626 - 144,503,889
singlet/doubletdoublet
Overlap geneEbf3
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L18.T7 (MSMg01no071_l18.b1)MSMg01-071L18.TJ (MSMg01no071_l18.g1)
ACCAG295447AG295448
length713707
length of high quality
(start - end)
422 (36 - 457)335 (68 - 402)
definitionCHROMAT_FILE: MSMg01no071_l18.b1 PHD_FILE: MSMg01no071_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:14 2005CHROMAT_FILE: MSMg01no071_l18.g1 PHD_FILE: MSMg01no071_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,379,626 - 144,380,039)(144,503,555 - 144,503,889)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCA
TTTAGATCTCCTTTAACTGTATTCAAAACTAAAACGCAAGGCTGGAGAGA
TGGCTTGGCAATCTGTCTGCTATTGCAGAGGACCTGTGTCGGGTTCCAAA
CACCTGCCTGGTGACTCACAACCATCTGTAATTTTAGTCTCAGGGGACTC
AGTGCCCTCCAGAGGCACCAGATGCACACGTGGTGACAGACAAAACATAA
TAGACATGAAAAATAAATAAAGAGGTAGATAGATAGATAGATCTAACAAA
ATAATATTAAACCAATAAATAAAAGGCAGCACATTGAAAAAAAATGTCTC
AAATACTTCAGAGCAGTCCCCTCTAAGAATGTCTTTGTCTCGCCAGCAGG
TTGTGAGAGCCGCTACACGGTTTGGGGGTCTCACTTTTTCCGAGGCATTG
CAGCCCAGGTGCACAGACTGAAGAGCCATCATGAAGGAATGGGGTTGTCT
TAGCCATGTTTTCTATTCCTGCACAACCTTCTTGACCAAGATACTAGTTG
TTTAGGAAAGGGTTTATTCAGCTTATACTTCCCTGTTGCTGTTCATCACT
ATTGGAATTCAGGACCTGGAACTCAGGCAGGTCATATAGCCCGATCTGAT
GCATAAGCCTTGGAAGGATGCTACCTTACTGGCTTGCCTCCACTGTCCTC
GTTCAGTTTGCTG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATATTTATTGGAATAAATGGACCGGTTGCTAC
AAATAGTTTATGCCGTCATTAAAACAGGACATATATGCTTTATTAAATGA
CTTGCGATTGGAATCAAACTCTGTCTTAATTAATTACGGCAATTAATATT
TGACAGAAAAATTCCAAGATCCCCCCCTTGTTTATTTTTAAACGTTTCTT
TCTCTGCTTGAAAACCATTTCATGGGGGTTCTGACCCCTCCCCTCAACAA
AGACAACTGACTGTCCTAAAGCTCATCGAGTTAGGCTGGCTTAGTTAGTT
CCCCTCCTCCTTTCTAGTGCCATGGCCTGGTAACACGTGTCATGTATTTG
GATTTAAAAGTTATATGTGCTGTTGTGAGAAGTCACCTTGTTCCCCTCTA
GTCCGTCTTCATCTCTCAGCCCCCCATCTCTATTATTCAAAGTCTGAGTT
CCAGGGGTCACTCAAACCCATCCACTGTTCTGCTCTCTCTCTCACCCTCT
GTCATACCTTGCAAATTATCTAATTACAAGCCGCTCCTTATCATATTATT
TAACTTGCCTTGTACAACTTTTCTGATGATATCTATTGCCTATCAGTAAT
GGGATTAATTGTAGAAAGATGCCTCCTTGCTTTTTGAGTTTGTCCAGTCT
CTGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l18.b1 MSMg01no071_l18.b1 CHROMAT_FILE:
MSMg01no071_l18.b1 PHD_FILE: MSMg01no071_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:14 2005
         (422 letters)



>mm_chr7_144379418_144380239
          Length = 822

 Score =  785 bits (406), Expect = 0.0
 Identities = 412/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcatttagatctcctttaactgtattcaaaactaaaacgcaaggctggagagatgg 68
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcatttagatctcctttaactatattcaaaactaaaacgcaaggctggagagatgg 268

                                                                       
Query: 69  cttggcaatctgtctgctattgcagaggacctgtgtcgggttccaaacacctgcctggtg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttggcaatctgtctgctattgcagaggacctgtgtcgggttccaaacacctgcctggtg 328

                                                                       
Query: 129 actcacaaccatctgtaattttagtctcaggggactcagtgccctccagaggcaccagat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actcacaaccatctgtaattttagtctcaggggactcagtgccctccagaggcaccagat 388

                                                                       
Query: 189 gcacacgtggtgacagacaaaacataatagacatgaaaaataaataaagaggtagataga 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcacacgtggtgacagacaaaacataatagacatgaaaaataaataaagaggtagataga 448

                                                                       
Query: 249 tagatagatctaacaaaataatattaaaccaataaataaaaggcagcacattgaaaaaaa 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tagatagatctaacaaaataatattaaaccaataaataaaaggcagcacattgaaaaaaa 508

                                                                       
Query: 309 atgtctcaaatacttcagagcagtcccctctaagaatgtctttgtctcgccagcaggttg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgtctcaaatacttcagagcagtcccctctaagaatgtctttgtctcgccagcaggttg 568

                                                                 
Query: 369 tgagagccgctacacggtttgggggtctcactttttccgaggcattgcagccca 422
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 569 tgagagccgctacacggtttgggggtctcactttttctgaggcattgcagccca 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no071_l18.g1 MSMg01no071_l18.g1 CHROMAT_FILE:
MSMg01no071_l18.g1 PHD_FILE: MSMg01no071_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:14 2005
         (335 letters)



>mm_chr7_144503355_144504089
          Length = 735

 Score =  601 bits (311), Expect = e-176
 Identities = 329/335 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttattggaataaatggaccggttgctacaaatagtttatgccgtcattaaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catatttattggaataaatggaccggttgctacaaatagtttatgccgtcattaaaacag 476

                                                                       
Query: 61  gacatatatgctttattaaatgacttgcgattggaatcaaactctgtcttaattaattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gacatatatgctttattaaatgacttgcgattggaatcaaactctgtcttaattaattac 416

                                                                       
Query: 121 ggcaattaatatttgacagaaaaattccaagatcccccccttgtttatttttaaacgttt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggtaattaatatttgacagaaaaattccaagatcccccccttgtttatttttaaacgttt 356

                                                                       
Query: 181 ctttctctgcttgaaaaccatttcatgggggttctgacccctcccctcaacaaagacaac 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 355 ctttctctgcttgaaaaccatttcatggggtttctgacccctcccctcaacaaagacaac 296

                                                                       
Query: 241 tgactgtcctaaagctcatcgagttaggctggcttagttagttcccctcctcctttctag 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgactgtcccaaagctcatcgagttaggctggcttagttagttcccctcctcctttctag 236

                                              
Query: 301 tgccatggcctggtaacacgtgtcatgtatttgga 335
           |||||||| ||||||||||| | ||||||||||||
Sbjct: 235 tgccatggtctggtaacacgagccatgtatttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)