BAC Information

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BAC

Clone NameMSMg01-072C16
Chromosome7 (Build37)
Map Location 108,275,306 - 108,375,277
singlet/doubletdoublet
Overlap geneFchsd2, EG622673
Upstream gene2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996
Downstream geneAtg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072C16.T7 (MSMg01no072_c16.b1)MSMg01-072C16.TJ (MSMg01no072_c16.g1)
ACCAG295777AG295778
length698694
length of high quality
(start - end)		607 (41 - 647)244 (66 - 309)
definitionCHROMAT_FILE: MSMg01no072_c16.b1 PHD_FILE: MSMg01no072_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:48 2005CHROMAT_FILE: MSMg01no072_c16.g1 PHD_FILE: MSMg01no072_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,275,306 - 108,275,908)(108,375,034 - 108,375,277)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCGTAACCCATGCTGACCTCAAACTCATTATCTCTCTACTATTTCTGCT
TCTTGAGATCTGGAATTACAAGTGTGCACCATTATCTGGCTTAATGAATT
TGTCAGAAAAGAGAAAAACGCTAAAAATTTGTTGACTTTAGTGTTCATCT
CAACAAATTAGGAAAAAAAGAAAAACCCAACACAACAGAAAATGTGTTTT
TAAAAAAGTTATAAGAACTGGTATGGTAGCACATGCCTTCAGTTTCAGCA
TGTAGGAGGCTAAGGCAGGAAGGTTGAATTTTCCAGGCCAACTGTGATAT
GTAGGGAGACTATATAAAACCCCAAACTCAGATTACCAAAAAGAGCAATG
GGAAGAGAATAATTATTATAAGTCAAGGGTACTGGTTAGTATTGAAGACT
ATCAAAAGCCTCAGTTACTTAATCAGTTATTCAATATCTCAGTGTTGCTA
TGAAGGAATTTTGTGGATGTGGTTGCCATGGACAGTCAGTTTACTTAAGG
AAAAGCGATTACCCTCAATGAAGTTATTAAGCCTTATTCAGTCATTTGAA
AGGCCTGAGTAAGAGCAAAACGGAAAACTTCTAGAAGTAATTCTCCGTCA
AGACTGCAGCACTAATTGCCACCTGAGTTTCTAGTCTGCCAGCCTGTC

ATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCCCGAAATTCTTAATTCTCCTGCCTCTACCTCTCACGCGCTA
GGGAAAGAGACATATACTTCCACACCAAACCTTATGCATTGTCTTTCAAA
GCAGACCAATATTAACCAGTCATTCTTGGACAGGATAATTGCAACACATT
TACCTTTAAGTTCACAGACTCTTCTACTAGCTCAGCTTTGTTGCCAAATC
CTCTCAGTATTTATTTATCTGGGCAGTGCTGAGGGATCCAACCTAATGCT
CTAACATATTAGATAAATGTTCTGTCACTAAACTAAACTCCAGCATAGTT
ATTTTACTTTGTTTTCTTTCCTAAGACAGAATTCTACTGTATAGCCCTGG
CTGTCCTGGAACTCACTTATTAGACTAGGCTGGCCTTCAACTCAAAGATG
TCCCCCTGCCTCTGTCTTCCCAGCCAGTTACTTCACTTTTTAACTTTTCA
TTCATCTTAATCATTTCAAGATCCTTATTGATAATTTTTTTTTAAATTTG
GTGAACCTTAATTTTATATTCTCCTTATGCTCTTTAGATATAATTAATTT
TAGTTCTTTGAACACATTAAAATAAGGAATTTAAAATCAGTGCCTAGTAG
ATTTCAGGAATAAAGTTCCCCGGGGGACATTTTTTTAAAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_c16.b1 MSMg01no072_c16.b1 CHROMAT_FILE:
MSMg01no072_c16.b1 PHD_FILE: MSMg01no072_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:48 2005
         (607 letters)



>mm_chr7_108275102_108276108
          Length = 1007

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccgtaacccatgctgacctcaaactcattatctctctactatttctgcttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccgtaacccatgctgacctcaaactcattatctctctactatttctgcttctt 264

                                                                       
Query: 65  gagatctggaattacaagtgtgcaccattatctggcttaatgaatttgtcagaaaagaga 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagatctgggattacaagtgtgcaccattatctggcttaatgaatttgtcagaaaagaga 324

                                                                       
Query: 125 aaaacgctaaaaatttgttgactttagtgttcatctcaacaaattaggaaaaaaagaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaacgctaaaaatttgttgactttagtgttcatctcaacaaattaggaaaaaaagaaaa 384

                                                                       
Query: 185 acccaacacaacagaaaatgtgtttttaaaaaagttataagaactggtatggtagcacat 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 acccaacacaacagaaaatgtgtttttaaaaaatttataagaactggtatggtagcacat 444

                                                                       
Query: 245 gccttcagtttcagcatgtaggaggctaaggcaggaaggttgaattttccaggccaactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccttcagtttcagcatgtaggaggctaaggcaggaaggttgaattttccaggccaactg 504

                                                                       
Query: 305 tgatatgtagggagactatataaaaccccaaactcagattaccaaaaagagcaatgggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgatatgtagggagactatataaaaccccaaactcagattaccaaaaagagcaatgggaa 564

                                                                       
Query: 365 gagaataattattataagtcaagggtactggttagtattgaagactatcaaaagcctcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaataattattataagtcaagggtactggttagtattgaagactatcaaaagcctcag 624

                                                                       
Query: 425 ttacttaatcagttattcaatatctcagtgttgctatgaaggaattttgtggatgtggtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacttaatcagttattcaatatctcagtgttgctatgaaggaattttgtggatgtggtt 684

                                                                       
Query: 485 gccatggacagtcagtttacttaaggaaaagcgattaccctcaatgaagttattaagcct 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 gccatggacagtcagtttacttaaggaaaagagattaccctcaatgaagttattaagcct 744

                                                                       
Query: 545 tattcagtcatttgaaaggcctgagtaagagcaaaacggaaaacttctagaagtaattct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tattcagtcatttgaaaggcctgagtaagagcaaaacggaaaacttctagaagtaattct 804

              
Query: 605 ccg 607
           |||
Sbjct: 805 ccg 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_c16.g1 MSMg01no072_c16.g1 CHROMAT_FILE:
MSMg01no072_c16.g1 PHD_FILE: MSMg01no072_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:49 2005
         (244 letters)



>mm_chr7_108374834_108375477
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttaattctcctgcctctacctctcacgcgctagggaaagagacatatacttccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcttaattctcctgcctctacctctcacgcgctagggaaagagacatatacttccacac 385

                                                                       
Query: 61  caaaccttatgcattgtctttcaaagcagaccaatattaaccagtcattcttggacagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaaccttatgcattgtctttcaaagcagaccaatattaaccagtcattcttggacagga 325

                                                                       
Query: 121 taattgcaacacatttacctttaagttcacagactcttctactagctcagctttgttgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taattgcaacacatttacctttaagttcacagactcttctactagctcagctttgttgcc 265

                                                                       
Query: 181 aaatcctctcagtatttatttatctgggcagtgctgagggatccaacctaatgctctaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatcctctcagtatttatttatctgggcagtgctgagggatccaacctaatgctctaac 205

               
Query: 241 atat 244
           ||||
Sbjct: 204 atat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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