BAC Information

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BAC

Clone NameMSMg01-073F13
Chromosome7 (Build37)
Map Location 110,316,805 - 110,317,051
singlet/doubletsinglet
Overlap genenone
Upstream geneNup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1
Downstream geneOlfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073F13.T7 (MSMg01no073_f13.b1)MSMg01-073F13.TJ (MSMg01no073_f13.g1)
ACCAG296668AG296669
length702707
length of high quality
(start - end)		247 (65 - 311)411 (75 - 485)
definitionCHROMAT_FILE: MSMg01no073_f13.b1 PHD_FILE: MSMg01no073_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:23 2005CHROMAT_FILE: MSMg01no073_f13.g1 PHD_FILE: MSMg01no073_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTCCCAGAGGACCGCGGAATTCATA
ACTTCTCAGAAAAATCATTATCAGGGAGGATGTGGGTGTTTTATTTAAAT
CACTGTATTCTTAACAAGGGATCAAGTCTCTGCACCTGCTTAAGACGTAT
CTGAAGCTAGCACAATAAGTAAAAGTGTCTTTATGTTTCAGTACCAGATA
CATAGGTGTGGAGTGGCAATGATATGCTGAGGGAACCTTAGAAACATAGG
TCCTGGACTCAACCGTGGAATAGGAATTGAGGGGAGATTGACGCTGAAGT
AGACTAAAGAGTGTAGTAGACACTGACTAAGATCCTCTGACATATCCTAC
AACCTACACTGAGGTAAATAATTAGGACTACAAATCTACTATAGATGACA
TTCATATCTGGACGTAATGAATGGACTGAGTGCTCAAGTACTTATTATTA
GAAATCAAACCTGCACATAGAAGCCTAACAGTTAAATGCCAGGGCCAGAT
GGTTACTCTTACTAAGCTATCATACATACCACAACATGTTTATCATATGG
ACATGATATGAGAGTAAAGGTTTCTTATCTAACTCCGGGACTATCCAGCA
ATACTTCAAGGTTATCCTCTTACTCTGACTATCACACATACCAATGAGGA
TTTTACCTATTTCTATCAGTCAACAAAGTCCTTATAGATTCACATTTATA
CT

NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTCAGTATTAAAAAGATGACTTCA
TGAATTTTATAGGCAAATGAACTAGAAAATATCATCCTGAGTGAGGTAAC
ACAGACACACCAGGACACACATGGTATGTACTCACTGATAAGTGGATATT
AGCCCCCAAAGCACATAATACCCATGAAACAACTCACAGACCATATGAGG
CTTTTCAAGAAGGAAAGCCAGAGTGTGGATGCTTCAATCCTACTTAGAAG
AGGGAACAAAAGTCACAGGAGGTATAAGAAGGGAGGACGCTGGGAGGGAG
AGAGGAAAGGGAGGAAAAAAAGGGGACAGGATCAGGTATGGGAAGAGACA
GGAGAGAAGTTATTTAATGTATTTGTTTTACGCATATGAGCCCCTCTTTA
ATACTTTAGCTGATGGCTGATATCCCCACAATAGTTGATAAAAACGGTGG
TGACTATAAGTAAGTATGTATAATACCTTTCTGCAGCACAAATCAGTCAC
TTCTGAGTTAGAGTCATAATGGCCTTTACTTTTATTTGCAAATATATTTT
AAAGTTTTATATGTACAACTCATTGACAATTGCCTTTATTGTATTTGTCA
CTTGATAAATTTTATCATTGCTTGTCCAATAAGATAAGAGTGATAATCAT
CGCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_f13.b1 MSMg01no073_f13.b1 CHROMAT_FILE:
MSMg01no073_f13.b1 PHD_FILE: MSMg01no073_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:23 2005
         (247 letters)



>mm_chr7_110316605_110317251
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattatcagggaggatgtgggtgttttatttaaatcactgtattcttaacaagggatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcattatcagggaggatgtgggtgttttatttaaatcactgtattcttaacaagggatca 388

                                                                       
Query: 61  agtctctgcacctgcttaagacgtatctgaagctagcacaataagtaaaagtgtctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtctctgcacctgcttaagacgtatctgaagctagcacaataagtaaaagtgtctttat 328

                                                                       
Query: 121 gtttcagtaccagatacataggtgtggagtggcaatgatatgctgagggaaccttagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtttcagtaccagatacataggtgtggagtggcaatgatatgctgagggaaccttagaaa 268

                                                                       
Query: 181 cataggtcctggactcaaccgtggaataggaattgaggggagattgacgctgaagtagac 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 cataggtcctggactcaaccgtggaataggaattgaggggaaattgacgctgaagtagac 208

                  
Query: 241 taaagag 247
           |||||||
Sbjct: 207 taaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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