BAC Information

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BAC

Clone NameMSMg01-073G11
Chromosome7 (Build37)
Map Location 70,604,749 - 70,605,056
singlet/doubletsinglet
Overlap geneOtud7a
Upstream genePeg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
Downstream geneLOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073G11.T7 (MSMg01no073_g11.b1)MSMg01-073G11.TJ (MSMg01no073_g11.g1)
ACCAG296712AG296713
length740730
length of high quality
(start - end)
314 (42 - 355)439 (73 - 511)
definitionCHROMAT_FILE: MSMg01no073_g11.b1 PHD_FILE: MSMg01no073_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:27 2005CHROMAT_FILE: MSMg01no073_g11.g1 PHD_FILE: MSMg01no073_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATATTTTATATATGCCCCTATCTTGTTCAATTTCTAATTTTGTTGATT
ATCTTTATTATTTTTTTGCTTCTAATGTGGCTTTTACATTTATCCTGTTT
ATTTTTAGTTTCTTTCCCAACCTATGTATCTTTTTGGTTGGTTTATCAAA
ATTATTTGATTTTTTTTCTGTTTTGTGGAGCATATTGCTATGCTGGACAA
TGGCCCCTCAAACATATCAATAGTTCTCTCCCCTGAACTTGTGAATGTAA
CACCTTGTAAGACAGAGGATTGTTGGGATTTTCCAAGCCCAAGTTGAATT
TAGGACCTATATTGTTTACTCCCCCACCCCAAACTGGGACATTTTCAGCA
TAATTCTGAATTGCCCCCTTGTAAATCATACACCCATCACCAAAGCTGAT
TCTCCTTCCAACAGAGGAAGACCATTACAGAAAACCACAACTGTTTCAAA
TGCACAGAGTAACTGTGATATATAGTATCTGCACCTAAACCTCTATGACC
ATAGTGTGCGGAGTGTACTAAATGTCTGTAATACCCATTATTAGTTGTTG
TATGGCTACTTTCCTTTAGAAACGATGTGAATATTATTCCTCGTTACCTT
AACTTTATGGTTTTTCTAAACCTATATCTTTTTTGTTATAATCCTCAGCT
TATTTGTCTATTTTGATAGTTATCCTTCTTCTTTTTCTCC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTACACCTGGACATTAAGCCTTCACA
GGAACAAGGGCCTCCCCTCCCATTGACACCTGATAAGGCCCCTTCAGCTC
CTTCAGTTCTTCCCCTAACTCCTCCATTGGGGTCCCTGTGCTCAGTCTGA
TGGTTGGCTGCAAGCCTCCTCATCTGTATTGGTCATGATCTTGCAGAGCC
GCTCAGGAGACAGCTGTATCAGGCTCCTATCAGCAAGCACTTCTTGGCTT
ATGTTCAATTTGTATTTGAGATAAGAGCCTTTCTTTTATTTGGTCAAAAA
TGGTGAGATGTTGGAAATTGGTTCTAATGCTTTGTCTTATTTTGGCTCCC
AAAGGTCACACTTCCAATCCTGAGGGTCCCTGCCCCCAGCTGGCTTATTT
GATAATAAAGAATTGCCATATAGCCATTGGCTGGGCAGGAAGAGGGGGCA
GGACTTTTAGATTGCATGGGCAAGGGGCCAAGGTGCAGGAGGGAGAATTG
CCATGACTTGTAGGGAGAGGGATCAGATTTTATAGTTGCAGAAGAAAAAT
CATCTAAAATGGTAAGTGGAAAGGTAAAACAGCCCTATGGGGGGTAGGGT
ATTTTCCGAAATTATCAGGTTATCAAATTATATCATGTAATCTAATGCTA
AAGATGTAATATTGTAAGGAAATGTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_g11.b1 MSMg01no073_g11.b1 CHROMAT_FILE:
MSMg01no073_g11.b1 PHD_FILE: MSMg01no073_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:27 2005
         (314 letters)



>mm_chr7_70604545_70605258
          Length = 714

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%), Gaps = 2/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatattttatatatgcccctatcttgttcaatttctaattttgttgattatctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatattttatatatgcccctatcttgttcaatttctaattttgttgattatctt 264

                                                                       
Query: 65  tattatttttttgcttctaatgtggcttttacatttatcctgtttatttttagtttcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tattatttttttgcttctaatgtggcttttacatttatcctgtttatttttagttccttt 324

                                                                       
Query: 125 cccaacctatgtatctttttggttggtttatcaaaattatttgattttttttctgttttg 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 cccaacctatgtatctttttggttggtttatcgaaattatttgattttttttctgttttg 384

                                                                       
Query: 185 tggagcatattgctatgctggacaatggcccctcaaacatatcaatagttctctcccctg 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggagcatat-gctatgctggacaatggcccctcaaacatatcaatagttctctcccctg 443

                                                                       
Query: 245 aacttgtgaatgtaacaccttgtaagacagaggattgttgggattttccaagcccaagtt 304
           |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 444 aacttgtgaatggaacaccttgtaagacagaggatcgt-gggattttccaagcccaagtt 502

                     
Query: 305 gaatttagga 314
           ||||||||||
Sbjct: 503 gaatttagga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)